| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.454 | celf2 | -0.070 |
| hoxd9a | 0.437 | fabp7a | -0.063 |
| hoxa10b | 0.418 | si:ch211-152c2.3 | -0.044 |
| hoxd12a | 0.411 | rorb | -0.044 |
| hoxa11b | 0.408 | mex3b | -0.042 |
| hoxd11a | 0.393 | en2b | -0.041 |
| hoxc10a | 0.354 | si:ch211-137a8.4 | -0.040 |
| hoxc11a | 0.354 | foxg1b | -0.039 |
| BX005254.3 | 0.347 | msi1 | -0.039 |
| hoxa11a | 0.343 | otx2a | -0.039 |
| hoxc11b | 0.325 | otx2b | -0.039 |
| hoxa9b | 0.307 | icn2 | -0.038 |
| hoxa9a | 0.286 | si:ch211-195b11.3 | -0.038 |
| hoxb9a | 0.283 | six3b | -0.038 |
| her1 | 0.283 | six6b | -0.036 |
| hoxb7a | 0.282 | otx1 | -0.034 |
| hoxc3a | 0.258 | ptprn2 | -0.034 |
| BX005254.2 | 0.240 | si:ch211-156b7.4 | -0.034 |
| cdx4 | 0.230 | agr1 | -0.033 |
| hoxc9a | 0.229 | efnb3b | -0.033 |
| BX001014.2 | 0.205 | foxg1a | -0.033 |
| hoxc6b | 0.205 | prdx2 | -0.033 |
| hoxd3a | 0.205 | scel | -0.033 |
| XLOC-042222 | 0.202 | selenow2b | -0.033 |
| hoxc12b | 0.200 | tcnbb | -0.033 |
| hoxd13a | 0.198 | zgc:193505 | -0.033 |
| sall4 | 0.196 | cldnb | -0.032 |
| hoxc8a | 0.182 | COX7A2 | -0.032 |
| XLOC-001964 | 0.182 | CR751602.2 | -0.032 |
| mllt3 | 0.175 | CU467822.1 | -0.032 |
| her7 | 0.174 | im:7152348 | -0.032 |
| hoxc12a | 0.174 | lye | -0.032 |
| msgn1 | 0.165 | mdkb | -0.032 |
| tbx16l | 0.157 | si:dkey-247k7.2 | -0.032 |
| myf5 | 0.154 | anxa1c | -0.031 |