| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd12a | 0.346 | celf2 | -0.036 |
| hoxc13a | 0.251 | fabp7a | -0.025 |
| hoxa13b | 0.234 | si:ch211-137a8.4 | -0.025 |
| hoxc13b | 0.228 | stmn1b | -0.024 |
| hoxc12b | 0.222 | mdkb | -0.022 |
| hoxa13a | 0.218 | mex3b | -0.022 |
| hoxc11b | 0.204 | si:dkey-276j7.1 | -0.022 |
| hoxa11b | 0.198 | rorb | -0.022 |
| hoxd10a | 0.198 | ckbb | -0.021 |
| hoxc11a | 0.188 | gpm6aa | -0.021 |
| hoxd11a | 0.187 | rtn1a | -0.021 |
| hoxa10b | 0.185 | tmsb | -0.021 |
| hoxa11a | 0.184 | agr1 | -0.020 |
| hoxb10a | 0.173 | en2b | -0.020 |
| hoxc12a | 0.166 | fscn1a | -0.020 |
| hoxb13a | 0.146 | irx1a | -0.019 |
| hoxc10a | 0.145 | mgst1.2 | -0.019 |
| hoxd9a | 0.142 | nova2 | -0.019 |
| hoxa9b | 0.128 | otx2b | -0.019 |
| XLOC-042222 | 0.113 | rhbg | -0.019 |
| si:dkeyp-110a12.4 | 0.110 | scel | -0.019 |
| BX005254.3 | 0.107 | si:ch211-152c2.3 | -0.019 |
| CABZ01074130.1 | 0.106 | si:ch211-195b11.3 | -0.019 |
| hoxb7a | 0.103 | si:dkey-247k7.2 | -0.019 |
| hoxa9a | 0.102 | tubb5 | -0.019 |
| ntd5 | 0.098 | anxa1b | -0.018 |
| tbx5a | 0.098 | fabp3 | -0.018 |
| fbln1 | 0.097 | foxg1b | -0.018 |
| sall4 | 0.096 | fut9d | -0.018 |
| LOC100538221 | 0.094 | icn2 | -0.018 |
| SPATA1 | 0.094 | krt17 | -0.018 |
| mllt3 | 0.093 | lye | -0.018 |
| crabp2a | 0.092 | marcksb | -0.018 |
| ccdc3a | 0.091 | otx2a | -0.018 |
| hoxb9a | 0.091 | si:ch73-52f15.5 | -0.018 |