| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| BX005254.3 | 0.233 | pvalb1 | -0.058 |
| cdx4 | 0.214 | pvalb2 | -0.057 |
| BX001014.2 | 0.209 | icn2 | -0.056 |
| hoxb7a | 0.202 | fabp3 | -0.055 |
| hoxb10a | 0.202 | krtt1c19e | -0.055 |
| hoxd10a | 0.175 | fabp7a | -0.053 |
| hoxc3a | 0.164 | si:ch211-195b11.3 | -0.052 |
| her1 | 0.157 | icn | -0.049 |
| hoxd12a | 0.155 | zgc:193505 | -0.049 |
| XLOC-001964 | 0.151 | pycard | -0.048 |
| hoxa10b | 0.150 | tcnbb | -0.048 |
| hoxc8a | 0.138 | anxa1a | -0.047 |
| hoxd9a | 0.138 | anxa2a | -0.047 |
| msgn1 | 0.136 | anxa1c | -0.046 |
| XLOC-042222 | 0.136 | si:ch211-105c13.3 | -0.046 |
| sall4 | 0.136 | wu:fa03e10 | -0.046 |
| hoxa11b | 0.135 | agr1 | -0.045 |
| nradd | 0.135 | scel | -0.045 |
| hoxc6b | 0.132 | aep1 | -0.044 |
| hoxa9a | 0.131 | lye | -0.044 |
| myf5 | 0.130 | wu:fb18f06 | -0.044 |
| nid2a | 0.129 | cyt1 | -0.043 |
| BX005254.2 | 0.128 | hrc | -0.043 |
| hoxa11a | 0.127 | krt17 | -0.043 |
| hoxd11a | 0.126 | s100w | -0.043 |
| her7 | 0.123 | si:ch211-125o16.4 | -0.043 |
| hoxa9b | 0.122 | si:ch73-52f15.5 | -0.043 |
| tbx16l | 0.121 | caspb | -0.042 |
| hoxb9a | 0.115 | fbp1a | -0.042 |
| apoc1 | 0.114 | gpm6aa | -0.042 |
| tbx6 | 0.112 | krt4 | -0.042 |
| znfl1k | 0.112 | krt5 | -0.042 |
| hspb1 | 0.109 | si:ch211-207n23.2 | -0.042 |
| znfl2a | 0.107 | si:dkey-222n6.2 | -0.042 |
| BX927258.1 | 0.104 | abcb5 | -0.041 |