| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.430 | celf2 | -0.083 |
| hoxc3a | 0.418 | sod1 | -0.058 |
| hoxb7a | 0.407 | icn | -0.056 |
| hoxb8a | 0.385 | ahcy | -0.054 |
| hoxc9a | 0.332 | pvalb1 | -0.054 |
| hoxa9a | 0.313 | hbbe1.3 | -0.052 |
| hoxc6b | 0.295 | hbae3 | -0.051 |
| cdx4 | 0.294 | fabp7a | -0.050 |
| BX005254.3 | 0.268 | prdx2 | -0.050 |
| hoxb10a | 0.264 | pvalb2 | -0.050 |
| hoxb1b | 0.251 | rorb | -0.050 |
| BX001014.2 | 0.250 | hbae1.1 | -0.048 |
| hoxb6b | 0.230 | apoa2 | -0.047 |
| hoxd9a | 0.225 | en2b | -0.047 |
| hoxa9b | 0.214 | hbbe1.1 | -0.047 |
| hoxb8b | 0.212 | otx2a | -0.047 |
| nradd | 0.200 | eef1da | -0.046 |
| hoxa10b | 0.182 | foxg1b | -0.046 |
| hoxd10a | 0.182 | krtt1c19e | -0.046 |
| cdx1a | 0.181 | si:ch211-195b11.3 | -0.045 |
| hoxc6a | 0.178 | aldob | -0.044 |
| hoxd3a | 0.175 | apoa1b | -0.044 |
| hoxb3a | 0.163 | blvrb | -0.044 |
| hoxc1a | 0.160 | hbbe2 | -0.044 |
| hoxa11b | 0.158 | otx2b | -0.044 |
| wnt5b | 0.156 | si:ch1073-80i24.3 | -0.044 |
| hoxb6a | 0.155 | gstp1 | -0.043 |
| msgn1 | 0.155 | icn2 | -0.043 |
| BX005254.2 | 0.148 | six3b | -0.043 |
| hoxa3a | 0.146 | sod2 | -0.043 |
| ldlrad2 | 0.146 | cahz | -0.042 |
| dhrs3b | 0.140 | six6b | -0.042 |
| hoxc10a | 0.140 | hbae1.3 | -0.041 |
| mllt3 | 0.138 | mid1ip1b | -0.041 |
| hoxd11a | 0.137 | nnr | -0.041 |