| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc3a | 0.303 | rarga | -0.097 |
| hoxb9a | 0.271 | col9a1a | -0.091 |
| hoxb8a | 0.269 | col2a1a | -0.086 |
| hoxc9a | 0.255 | six1a | -0.084 |
| hoxb7a | 0.192 | col9a2 | -0.083 |
| hoxa9a | 0.168 | foxc1b | -0.078 |
| cdx4 | 0.158 | fibina | -0.075 |
| hoxb1b | 0.143 | fgfbp2b | -0.072 |
| hoxc6b | 0.142 | dlx5a | -0.069 |
| hoxb10a | 0.140 | col9a3 | -0.068 |
| rdh10a | 0.136 | col11a2 | -0.066 |
| wu:fb97g03 | 0.134 | six2a | -0.062 |
| col5a2a | 0.132 | sox9a | -0.061 |
| hoxb8b | 0.127 | ecrg4a | -0.061 |
| hoxc1a | 0.126 | cnmd | -0.061 |
| BX001014.2 | 0.123 | gsc | -0.060 |
| BX005254.3 | 0.122 | dlx2a | -0.059 |
| cfd | 0.122 | VIT | -0.058 |
| aplnr2 | 0.121 | fxyd1 | -0.057 |
| isl2b | 0.120 | hpgd | -0.056 |
| wt1a | 0.119 | dlx3b | -0.055 |
| hoxa9b | 0.118 | dlx4a | -0.054 |
| tmem88b | 0.118 | ucmab | -0.053 |
| meis1b | 0.118 | dlx1a | -0.053 |
| zgc:154093 | 0.116 | otos | -0.052 |
| emilin2b | 0.116 | KCTD15 | -0.050 |
| col1a1b | 0.111 | CYTL1 | -0.049 |
| wnt7bb | 0.111 | eya1 | -0.049 |
| gcga | 0.110 | dlx4b | -0.048 |
| meis3 | 0.108 | lhx6 | -0.048 |
| tmem98 | 0.108 | MDFI | -0.048 |
| hoxb6b | 0.107 | LO018188.1 | -0.047 |
| alkal2b | 0.105 | LOC101883507 | -0.047 |
| hoxd9a | 0.104 | col11a1a | -0.046 |
| hoxc6a | 0.103 | matn1 | -0.046 |