| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb7a | 0.445 | actc1b | -0.251 |
| cdx4 | 0.395 | rpl37 | -0.242 |
| hoxc3a | 0.385 | fabp3 | -0.240 |
| hes6 | 0.374 | pabpc4 | -0.228 |
| cx43.4 | 0.338 | ckma | -0.227 |
| BX005254.3 | 0.326 | ttn.2 | -0.225 |
| cdx1a | 0.324 | atp2a1 | -0.224 |
| BX001014.2 | 0.324 | myl1 | -0.222 |
| wnt5b | 0.320 | gamt | -0.222 |
| itm2cb | 0.316 | mylpfa | -0.220 |
| hoxa9a | 0.312 | ckmb | -0.219 |
| hoxb9a | 0.306 | zgc:114188 | -0.217 |
| vox | 0.298 | pvalb1 | -0.215 |
| apoc1 | 0.295 | eef1da | -0.215 |
| si:ch73-281n10.2 | 0.293 | ak1 | -0.212 |
| nradd | 0.289 | pvalb2 | -0.210 |
| apoeb | 0.282 | mylz3 | -0.208 |
| hmga1a | 0.282 | tnnt3b | -0.206 |
| hmgn6 | 0.280 | tnnt3a | -0.205 |
| msgn1 | 0.279 | rps10 | -0.204 |
| hoxc6b | 0.276 | eno1a | -0.203 |
| ptmab | 0.276 | tmem38a | -0.203 |
| nucks1a | 0.276 | rps17 | -0.202 |
| si:ch211-222l21.1 | 0.272 | tnnc2 | -0.200 |
| acin1a | 0.271 | ttn.1 | -0.198 |
| hoxb1b | 0.269 | aldoab | -0.198 |
| hmgb2a | 0.268 | si:ch73-367p23.2 | -0.198 |
| fgf8a | 0.267 | gapdh | -0.196 |
| anp32e | 0.266 | neb | -0.195 |
| cirbpa | 0.264 | bhmt | -0.195 |
| hoxc9a | 0.263 | nme2b.2 | -0.195 |
| seta | 0.262 | acta1b | -0.194 |
| hspb1 | 0.262 | eif4a1b | -0.193 |
| hnrnpaba | 0.261 | ldb3b | -0.192 |
| si:ch73-1a9.3 | 0.261 | tnni2a.4 | -0.191 |