| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.451 | celf2 | -0.089 |
| hoxa9a | 0.369 | si:ch211-152c2.3 | -0.056 |
| hoxb10a | 0.341 | rorb | -0.052 |
| hoxc8a | 0.332 | en2b | -0.050 |
| hoxc3a | 0.320 | foxg1b | -0.049 |
| hoxd9a | 0.320 | otx2a | -0.049 |
| hoxa9b | 0.319 | otx2b | -0.049 |
| hoxb8a | 0.303 | six3b | -0.048 |
| hoxb7a | 0.269 | otx1 | -0.045 |
| hoxa10b | 0.265 | six6b | -0.044 |
| hoxc6b | 0.249 | mir181b-3 | -0.042 |
| hoxd10a | 0.229 | si:ch1073-80i24.3 | -0.041 |
| hoxc10a | 0.223 | apoa2 | -0.040 |
| gfap | 0.209 | foxg1a | -0.040 |
| hoxa11b | 0.209 | irx7 | -0.040 |
| si:ch73-265d7.2 | 0.209 | lhx2b | -0.040 |
| hoxd3a | 0.193 | otx5 | -0.040 |
| ldlrad2 | 0.191 | apoa1b | -0.039 |
| hoxb1b | 0.189 | crx | -0.039 |
| vim | 0.184 | nnr | -0.039 |
| tes | 0.176 | si:ch211-156b7.4 | -0.039 |
| hoxd11a | 0.174 | six3a | -0.039 |
| hoxd12a | 0.169 | syt5b | -0.039 |
| hoxc11a | 0.165 | fzd5 | -0.038 |
| slc1a3a | 0.165 | hbbe2 | -0.038 |
| hoxa11a | 0.164 | mab21l1 | -0.038 |
| BX005254.3 | 0.161 | ptprn2 | -0.038 |
| si:dkeyp-110a12.4 | 0.161 | shisa2a | -0.038 |
| hoxc11b | 0.157 | snap25b | -0.038 |
| BX005254.2 | 0.144 | tbx2b | -0.038 |
| col28a2a | 0.138 | mid1ip1b | -0.037 |
| BX001014.2 | 0.136 | chchd10 | -0.036 |
| hoxb3a | 0.135 | hnrnpr | -0.036 |
| cdx4 | 0.134 | lhx9 | -0.036 |
| cldn19 | 0.132 | myt1la | -0.036 |