| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd12a | 0.416 | celf2 | -0.045 |
| hoxc11a | 0.371 | fabp7a | -0.034 |
| hoxc12b | 0.334 | si:ch211-152c2.3 | -0.030 |
| hoxd10a | 0.325 | rorb | -0.029 |
| hoxa11a | 0.308 | en2b | -0.027 |
| hoxa11b | 0.295 | foxg1b | -0.026 |
| hoxd11a | 0.287 | otx2a | -0.026 |
| hoxb10a | 0.283 | otx2b | -0.026 |
| hoxa10b | 0.264 | six3b | -0.026 |
| hoxc10a | 0.260 | fzd5 | -0.025 |
| hoxd9a | 0.251 | si:ch211-195b11.3 | -0.025 |
| hoxc12a | 0.237 | otx1 | -0.024 |
| hoxd13a | 0.204 | ptprn2 | -0.024 |
| hoxa9b | 0.200 | six6b | -0.024 |
| hoxa9a | 0.195 | krt17 | -0.023 |
| BX005254.3 | 0.192 | rhbg | -0.023 |
| hoxb9a | 0.192 | selenow2b | -0.023 |
| hoxc13a | 0.174 | si:dkey-247k7.2 | -0.023 |
| hoxb7a | 0.168 | agr1 | -0.022 |
| hoxc9a | 0.157 | icn2 | -0.022 |
| hoxc6b | 0.153 | irx1a | -0.022 |
| her1 | 0.149 | krtt1c19e | -0.022 |
| hoxc3a | 0.148 | mgst1.2 | -0.022 |
| hoxc13b | 0.147 | scel | -0.022 |
| XLOC-042222 | 0.144 | si:ch211-137a8.4 | -0.022 |
| BX005254.2 | 0.142 | si:dkey-33i11.9 | -0.022 |
| hoxd3a | 0.140 | slc29a1a | -0.022 |
| sall4 | 0.121 | tcnbb | -0.022 |
| cdx4 | 0.117 | zgc:193505 | -0.022 |
| hoxa13b | 0.115 | col9a1a | -0.022 |
| ldlrad2 | 0.113 | abcb5 | -0.021 |
| fbln1 | 0.112 | apoa1b | -0.021 |
| hoxc8a | 0.105 | COX7A2 | -0.021 |
| si:dkeyp-110a12.4 | 0.103 | foxg1a | -0.021 |
| XLOC-001964 | 0.102 | fut9d | -0.021 |