| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc11a | 0.333 | col9a1a | -0.049 |
| hoxc12b | 0.304 | col2a1a | -0.048 |
| kazald2 | 0.248 | junba | -0.048 |
| hoxd12a | 0.230 | col9a2 | -0.043 |
| hoxa11a | 0.216 | col11a1a | -0.041 |
| hoxd11a | 0.193 | fgfbp2b | -0.040 |
| hoxc12a | 0.191 | ecrg4a | -0.040 |
| hoxc10a | 0.191 | foxc1b | -0.039 |
| hoxa11b | 0.171 | socs3a | -0.039 |
| aplnr2 | 0.170 | barx1 | -0.038 |
| emilin2b | 0.168 | col9a3 | -0.037 |
| zmp:0000000846 | 0.166 | fosab | -0.037 |
| hoxd10a | 0.153 | col11a2 | -0.036 |
| apela | 0.151 | adgrl2a | -0.036 |
| hoxb9a | 0.145 | dlx5a | -0.036 |
| tnn | 0.144 | gsc | -0.036 |
| c1qtnf12 | 0.143 | sox9a | -0.035 |
| postnb | 0.139 | six2a | -0.034 |
| hoxb10a | 0.136 | six1a | -0.034 |
| tuba8l2 | 0.129 | sema3bl | -0.033 |
| capn12 | 0.129 | cldn11a | -0.033 |
| pax9 | 0.125 | angptl1a | -0.033 |
| hoxa10b | 0.120 | fxyd1 | -0.032 |
| ca6 | 0.118 | cxcl12a | -0.032 |
| ankrd1b | 0.118 | foxf2a | -0.032 |
| nog1 | 0.113 | KCTD15 | -0.032 |
| hoxd13a | 0.111 | hpgd | -0.032 |
| hoxc6b | 0.110 | LOC101883507 | -0.032 |
| crabp2a | 0.109 | hand2 | -0.031 |
| cd82a | 0.109 | nfia | -0.031 |
| clec19a | 0.109 | si:ch211-156j16.1 | -0.030 |
| col5a2a | 0.107 | atp5mc3a | -0.030 |
| hoxd9a | 0.105 | trabd2a | -0.030 |
| CABZ01039096.1 | 0.104 | dlx2a | -0.030 |
| si:dkey-238c7.16 | 0.104 | tgfb2 | -0.029 |