| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd12a | 0.475 | NC-002333.4 | -0.109 |
| hoxc11a | 0.395 | nr6a1a | -0.104 |
| hoxd10a | 0.385 | akap12b | -0.101 |
| hoxa11a | 0.329 | stm | -0.101 |
| hoxb10a | 0.317 | tnni2b.1 | -0.094 |
| hoxa11b | 0.301 | si:ch211-152c2.3 | -0.092 |
| hoxc12b | 0.298 | hspb1 | -0.092 |
| her1 | 0.291 | zmp:0000000624 | -0.092 |
| hoxd11a | 0.289 | fxr2 | -0.091 |
| fbln1 | 0.266 | COX7A2 | -0.090 |
| hoxc10a | 0.263 | ttn.2 | -0.089 |
| her12 | 0.259 | hnrnpa1a | -0.089 |
| hoxa10b | 0.259 | klhl41b | -0.086 |
| itm2cb | 0.250 | metap2b | -0.086 |
| hoxd13a | 0.249 | s100a1 | -0.084 |
| hoxa13b | 0.225 | cox7c | -0.084 |
| hoxd3a | 0.223 | myog | -0.083 |
| hoxc12a | 0.223 | ttn.1 | -0.083 |
| rarga | 0.217 | thrap3a | -0.083 |
| BX005254.3 | 0.215 | efhd1 | -0.082 |
| her7 | 0.212 | BX927327.1 | -0.082 |
| ephb3 | 0.207 | jam2a | -0.081 |
| sall4 | 0.205 | flncb | -0.081 |
| zgc:162939 | 0.192 | zgc:92518 | -0.078 |
| pcdh8 | 0.191 | hnrnpd | -0.078 |
| greb1 | 0.191 | nme2b.2 | -0.078 |
| hoxd9a | 0.188 | si:ch211-131k2.3 | -0.078 |
| hoxc13b | 0.188 | zgc:101853 | -0.076 |
| LO016987.2 | 0.182 | desma | -0.076 |
| thbs2a | 0.182 | ca9 | -0.076 |
| gdf11 | 0.182 | si:dkey-56m19.5 | -0.076 |
| nid2a | 0.181 | ISCU | -0.075 |
| hnrnpa0l | 0.175 | polr2gl | -0.075 |
| XLOC-042222 | 0.175 | acin1b | -0.075 |
| rargb | 0.174 | phlda2 | -0.075 |