| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxa10b | 0.445 | celf2 | -0.065 |
| hoxd10a | 0.408 | fabp7a | -0.053 |
| hoxd9a | 0.400 | cldnb | -0.052 |
| hoxd12a | 0.383 | icn | -0.052 |
| hoxb10a | 0.375 | wu:fb18f06 | -0.052 |
| hoxd11a | 0.367 | si:ch211-195b11.3 | -0.051 |
| hoxc10a | 0.350 | epcam | -0.049 |
| hoxc11a | 0.350 | krtt1c19e | -0.049 |
| hoxa9b | 0.345 | icn2 | -0.048 |
| hoxa11a | 0.338 | pycard | -0.048 |
| hoxb9a | 0.301 | s100v1 | -0.047 |
| hoxa9a | 0.300 | cd9b | -0.046 |
| hoxc11b | 0.295 | krt5 | -0.046 |
| BX005254.3 | 0.259 | selenow2b | -0.046 |
| hoxb7a | 0.242 | spint2 | -0.046 |
| hoxa13b | 0.221 | zgc:193505 | -0.046 |
| hoxc3a | 0.218 | agr1 | -0.045 |
| hoxc12b | 0.217 | cyt1 | -0.045 |
| hoxc9a | 0.209 | scel | -0.045 |
| hoxd13a | 0.198 | si:ch211-105c13.3 | -0.045 |
| hoxd3a | 0.195 | anxa1c | -0.044 |
| BX005254.2 | 0.192 | anxa2a | -0.044 |
| her1 | 0.192 | cldne | -0.044 |
| hoxc6b | 0.189 | krt17 | -0.044 |
| hoxc12a | 0.185 | lye | -0.044 |
| BX001014.2 | 0.176 | si:dkey-87o1.2 | -0.044 |
| hoxc13a | 0.167 | tmem176l.4 | -0.044 |
| XLOC-042222 | 0.167 | cfl1l | -0.043 |
| cdx4 | 0.164 | krt4 | -0.043 |
| fbln1 | 0.160 | ppl | -0.043 |
| hoxc8a | 0.158 | tcnbb | -0.043 |
| sall4 | 0.157 | wu:fa03e10 | -0.043 |
| myf5 | 0.146 | rorb | -0.043 |
| XLOC-001964 | 0.145 | caspb | -0.042 |
| tcf15 | 0.143 | cyt1l | -0.042 |