| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbx6 | 0.531 | tuba1c | -0.091 |
| tcf15 | 0.504 | fabp3 | -0.086 |
| msgn1 | 0.475 | her15.1 | -0.086 |
| meox1 | 0.435 | XLOC-003690 | -0.081 |
| her1 | 0.407 | fabp7a | -0.080 |
| BX001014.2 | 0.394 | nova2 | -0.079 |
| tbx16l | 0.368 | tuba1a | -0.079 |
| ripply2 | 0.350 | wu:fb55g09 | -0.077 |
| hsp90aa1.1 | 0.345 | XLOC-003689 | -0.077 |
| her7 | 0.331 | mdkb | -0.076 |
| LOC110438394 | 0.329 | prdx2 | -0.076 |
| znfl1k | 0.322 | msi1 | -0.073 |
| mespaa | 0.320 | si:ch211-137a8.4 | -0.073 |
| dmrt2a | 0.318 | XLOC-003692 | -0.073 |
| XLOC-042229 | 0.299 | mex3b | -0.071 |
| BX276101.1 | 0.297 | sox3 | -0.071 |
| myod1 | 0.290 | krt4 | -0.070 |
| BX005254.3 | 0.283 | gapdhs | -0.069 |
| fgf17 | 0.282 | cotl1 | -0.068 |
| ripply1 | 0.278 | elavl3 | -0.068 |
| unc45b | 0.268 | gpm6aa | -0.068 |
| im:7138239 | 0.263 | her4.2 | -0.067 |
| fn1b | 0.261 | celf2 | -0.064 |
| apoc1 | 0.259 | ckbb | -0.064 |
| XLOC-009784 | 0.258 | cyt1 | -0.064 |
| hoxb7a | 0.257 | abhd6a | -0.064 |
| XLOC-040516 | 0.256 | pvalb1 | -0.063 |
| mespab | 0.254 | tox | -0.063 |
| zgc:92429 | 0.250 | calm1a | -0.063 |
| pcdh8 | 0.243 | icn | -0.062 |
| tbx16 | 0.239 | pvalb2 | -0.061 |
| has2 | 0.236 | rtn1a | -0.061 |
| cdx4 | 0.231 | s100a10b | -0.060 |
| BX927258.1 | 0.228 | cyt1l | -0.059 |
| nid2a | 0.228 | tmsb1 | -0.058 |