| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.423 | celf2 | -0.094 |
| hoxc3a | 0.423 | icn | -0.084 |
| BX001014.2 | 0.418 | pvalb1 | -0.082 |
| hoxc8a | 0.407 | krtt1c19e | -0.081 |
| hoxb9a | 0.401 | icn2 | -0.078 |
| BX005254.3 | 0.391 | pvalb2 | -0.077 |
| hoxb10a | 0.362 | si:ch211-195b11.3 | -0.077 |
| hoxc6b | 0.332 | anxa1a | -0.076 |
| hoxa9a | 0.330 | cyt1 | -0.076 |
| hoxb8a | 0.311 | krt4 | -0.075 |
| msgn1 | 0.302 | eef1da | -0.073 |
| hoxd9a | 0.283 | hbbe1.3 | -0.073 |
| hoxd10a | 0.282 | ahcy | -0.072 |
| hoxa9b | 0.272 | cyt1l | -0.071 |
| hoxc9a | 0.269 | pycard | -0.070 |
| hoxa10b | 0.257 | wu:fb18f06 | -0.070 |
| myf5 | 0.257 | hbae3 | -0.068 |
| nradd | 0.256 | s100a10b | -0.067 |
| cdx1a | 0.252 | zgc:193505 | -0.067 |
| hoxb1b | 0.252 | s100v2 | -0.066 |
| tbx16l | 0.245 | tcnbb | -0.066 |
| hoxa11b | 0.242 | hbae1.1 | -0.065 |
| her1 | 0.234 | s100v1 | -0.065 |
| her7 | 0.232 | aep1 | -0.064 |
| BX005254.2 | 0.219 | agr1 | -0.064 |
| hoxd12a | 0.210 | anxa1c | -0.064 |
| hspb1 | 0.208 | si:ch211-105c13.3 | -0.064 |
| XLOC-001964 | 0.206 | zgc:153284 | -0.064 |
| hoxd11a | 0.203 | cfl1l | -0.063 |
| hoxb6b | 0.202 | wu:fa03e10 | -0.063 |
| mllt3 | 0.202 | ckbb | -0.062 |
| apoc1 | 0.201 | gpm6aa | -0.062 |
| tbx6 | 0.196 | krt5 | -0.062 |
| hoxa11a | 0.194 | anxa2a | -0.061 |
| ldlrad2 | 0.194 | caspb | -0.061 |