| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.284 | rarga | -0.077 |
| BX001014.2 | 0.266 | six1a | -0.070 |
| hoxb8a | 0.253 | fibina | -0.068 |
| hoxb9a | 0.252 | col2a1a | -0.068 |
| wu:fb97g03 | 0.230 | col9a1a | -0.067 |
| hoxb10a | 0.213 | foxc1b | -0.066 |
| hoxc3a | 0.211 | col9a2 | -0.066 |
| hoxc8a | 0.192 | fgfbp2b | -0.059 |
| hoxa9a | 0.178 | col9a3 | -0.056 |
| BX005254.3 | 0.177 | cnmd | -0.054 |
| znfl2a | 0.171 | LO018188.1 | -0.053 |
| cfd | 0.161 | CU929237.1 | -0.053 |
| hoxc6b | 0.160 | sox9a | -0.052 |
| BX469925.3 | 0.156 | dlx5a | -0.051 |
| hoxc9a | 0.149 | col2a1b | -0.051 |
| hoxb1b | 0.146 | col11a2 | -0.050 |
| fbln1 | 0.138 | tgfb3 | -0.049 |
| emilin2b | 0.136 | VIT | -0.049 |
| fbn2a.1 | 0.135 | six2a | -0.048 |
| tmem88b | 0.128 | ecrg4a | -0.046 |
| fgf10b | 0.127 | dlx2a | -0.043 |
| col7a1l | 0.123 | col11a1a | -0.043 |
| hoxa9b | 0.121 | gsc | -0.043 |
| tuba8l2 | 0.118 | col8a2 | -0.041 |
| hoxd10a | 0.114 | cdh11 | -0.041 |
| hoxb6b | 0.113 | KCTD15 | -0.041 |
| si:ch211-197h24.8 | 0.112 | eef1da | -0.041 |
| si:dkey-73n10.1 | 0.112 | sparc | -0.040 |
| cdh13 | 0.111 | hpgd | -0.039 |
| vox | 0.110 | dlx3b | -0.039 |
| BX548024.1 | 0.109 | dlx4a | -0.039 |
| hoxb8b | 0.109 | otos | -0.039 |
| apoeb | 0.108 | tgfb2 | -0.039 |
| hoxd9a | 0.108 | sema3bl | -0.039 |
| BX927395.1 | 0.105 | pvalb2 | -0.039 |