| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.381 | hbae1.1 | -0.166 |
| hoxc3a | 0.356 | hbbe1.3 | -0.163 |
| hoxb9a | 0.336 | hbae3 | -0.159 |
| hoxa11b | 0.313 | hbbe2 | -0.156 |
| cdx4 | 0.308 | hbae1.3 | -0.156 |
| BX005254.3 | 0.307 | prdx2 | -0.156 |
| BX001014.2 | 0.302 | hbbe1.1 | -0.153 |
| etv2 | 0.297 | cahz | -0.146 |
| hoxd9a | 0.295 | blvrb | -0.140 |
| mnx1 | 0.292 | hbbe1.2 | -0.138 |
| fbln1 | 0.289 | hemgn | -0.136 |
| hoxd10a | 0.284 | alas2 | -0.125 |
| dact2 | 0.276 | tspo | -0.124 |
| hoxa9a | 0.275 | slc4a1a | -0.123 |
| hoxc9a | 0.270 | si:ch211-250g4.3 | -0.122 |
| hoxc8a | 0.270 | nt5c2l1 | -0.118 |
| npas4l | 0.261 | gpx1a | -0.116 |
| fgf10b | 0.259 | creg1 | -0.115 |
| hoxc6b | 0.253 | zgc:163057 | -0.111 |
| hoxa10b | 0.249 | epb41b | -0.111 |
| vox | 0.244 | si:ch211-207c6.2 | -0.108 |
| BX927395.1 | 0.240 | nmt1b | -0.105 |
| flrt3 | 0.238 | tmem14ca | -0.102 |
| hoxa11a | 0.230 | plac8l1 | -0.101 |
| vcana | 0.228 | fth1a | -0.100 |
| si:dkey-52l18.4 | 0.228 | tmod4 | -0.098 |
| lmo2 | 0.227 | si:ch211-227m13.1 | -0.089 |
| arid3b | 0.225 | add2 | -0.084 |
| wu:fb97g03 | 0.222 | hbae5 | -0.083 |
| tspan7 | 0.219 | sptb | -0.083 |
| tpm4a | 0.215 | klf1 | -0.083 |
| ndnf | 0.213 | si:dkey-240n22.3 | -0.083 |
| lsp1 | 0.213 | ucp3 | -0.079 |
| cx43.4 | 0.209 | rfesd | -0.078 |
| wasf3b | 0.209 | hdr | -0.078 |