| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc8a | 0.353 | h3f3a | -0.075 |
| hoxb9a | 0.337 | marcksl1a | -0.072 |
| hoxb8a | 0.313 | rpl37 | -0.072 |
| cdx4 | 0.263 | rps10 | -0.071 |
| hoxc3a | 0.260 | nova2 | -0.067 |
| BX001014.2 | 0.250 | zgc:114188 | -0.067 |
| hoxa9a | 0.224 | celf2 | -0.062 |
| hoxc6b | 0.210 | hnrnpa0l | -0.062 |
| BX005254.3 | 0.202 | CR383676.1 | -0.062 |
| hoxa9b | 0.201 | gpm6aa | -0.061 |
| hoxc9a | 0.194 | tuba1c | -0.059 |
| hoxd9a | 0.177 | ptmaa | -0.057 |
| nradd | 0.161 | nme2b.1 | -0.052 |
| hoxb10a | 0.155 | rps17 | -0.051 |
| hoxb6b | 0.154 | fabp3 | -0.050 |
| hoxb6a | 0.147 | rtn1a | -0.050 |
| hoxc6a | 0.144 | si:ch1073-429i10.3.1 | -0.049 |
| cdx1a | 0.141 | her15.1 | -0.049 |
| hoxb8b | 0.135 | tubb5 | -0.048 |
| hoxb1b | 0.124 | zgc:165461 | -0.048 |
| nkx1.2la | 0.121 | cspg5a | -0.047 |
| hoxa10b | 0.119 | CU467822.1 | -0.047 |
| hoxa11b | 0.105 | actb2 | -0.047 |
| krt18a.1 | 0.105 | ppiab | -0.046 |
| wnt5b | 0.103 | mbd3b | -0.046 |
| hspb1 | 0.101 | mdkb | -0.046 |
| chrd | 0.093 | XLOC-003692 | -0.046 |
| BX005254.2 | 0.093 | abhd6a | -0.045 |
| dhrs3b | 0.092 | marcksl1b | -0.045 |
| hoxc10a | 0.090 | mex3b | -0.044 |
| hoxd10a | 0.090 | tmsb4x | -0.044 |
| erbb3b | 0.088 | stmn1b | -0.043 |
| serpinh1b | 0.087 | eef1b2 | -0.043 |
| mcamb | 0.086 | efnb3b | -0.042 |
| foxd3 | 0.083 | zgc:158463 | -0.042 |