| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb1b | 0.253 | ckbb | -0.084 |
| hoxc3a | 0.230 | celf2 | -0.082 |
| hoxc1a | 0.225 | hbbe1.3 | -0.073 |
| hoxb8a | 0.184 | pvalb1 | -0.073 |
| hoxb6b | 0.181 | stmn1b | -0.073 |
| cdx4 | 0.175 | hbae3 | -0.071 |
| hoxb5b | 0.173 | gpm6ab | -0.069 |
| hoxb6a | 0.161 | pvalb2 | -0.069 |
| slc1a3a | 0.160 | gpm6aa | -0.068 |
| dhrs3a | 0.152 | rtn1a | -0.068 |
| hoxb3a | 0.149 | tuba1c | -0.066 |
| cyp26a1 | 0.145 | hbae1.1 | -0.065 |
| hoxb7a | 0.142 | hbbe1.1 | -0.065 |
| hoxc8a | 0.140 | tmsb | -0.063 |
| hoxb9a | 0.138 | CU467822.1 | -0.061 |
| cdx1a | 0.136 | actc1b | -0.058 |
| hoxb8b | 0.136 | hbbe2 | -0.058 |
| CABZ01075068.1 | 0.135 | elavl3 | -0.055 |
| hoxa3a | 0.133 | gng3 | -0.055 |
| wnt5b | 0.131 | hbae1.3 | -0.055 |
| sp5l | 0.130 | sncb | -0.055 |
| sox32 | 0.129 | fez1 | -0.054 |
| wu:fb97g03 | 0.127 | hbbe1.2 | -0.054 |
| nr6a1b | 0.125 | rtn1b | -0.053 |
| si:ch73-265d7.2 | 0.125 | myt1la | -0.052 |
| hspb1 | 0.123 | ywhah | -0.051 |
| hoxb5a | 0.122 | vamp2 | -0.050 |
| hoxc6b | 0.121 | CU634008.1 | -0.050 |
| nradd | 0.119 | cbfa2t3 | -0.049 |
| raraa | 0.119 | elavl4 | -0.049 |
| sox17 | 0.119 | mab21l1 | -0.049 |
| dact2 | 0.118 | lhx9 | -0.048 |
| wnt11r | 0.117 | sox4a | -0.048 |
| apoeb | 0.116 | celf3a | -0.047 |
| id1 | 0.115 | pbx3b | -0.047 |