| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb7a | 0.423 | celf2 | -0.102 |
| hoxb9a | 0.420 | pvalb1 | -0.075 |
| hoxc8a | 0.418 | rorb | -0.074 |
| hoxb8a | 0.402 | sod1 | -0.073 |
| hoxb1b | 0.341 | pvalb2 | -0.070 |
| hoxc6b | 0.331 | en2b | -0.068 |
| hoxa9a | 0.329 | otx2a | -0.066 |
| hoxb10a | 0.329 | otx2b | -0.065 |
| hoxc9a | 0.320 | ckbb | -0.064 |
| BX001014.2 | 0.312 | fabp7a | -0.064 |
| cdx4 | 0.308 | eef1da | -0.063 |
| hoxb6b | 0.307 | foxg1b | -0.063 |
| BX005254.3 | 0.297 | hbbe1.3 | -0.063 |
| hoxc1a | 0.286 | hbae3 | -0.062 |
| hoxd9a | 0.280 | six3b | -0.062 |
| hoxb3a | 0.270 | six6b | -0.061 |
| hoxb6a | 0.263 | ahcy | -0.059 |
| hoxa9b | 0.258 | otx1 | -0.059 |
| hoxd10a | 0.258 | hbbe1.1 | -0.058 |
| hoxa10b | 0.249 | hbae1.1 | -0.056 |
| hoxb8b | 0.244 | sod2 | -0.056 |
| hoxa3a | 0.236 | icn | -0.055 |
| hoxd3a | 0.231 | mid1ip1b | -0.055 |
| dhrs3b | 0.230 | mir181b-3 | -0.053 |
| ldlrad2 | 0.219 | prdx2 | -0.053 |
| hoxa11b | 0.218 | apoa2 | -0.052 |
| XLOC-001964 | 0.218 | crx | -0.052 |
| hoxb5b | 0.212 | hbbe2 | -0.052 |
| si:ch73-265d7.2 | 0.203 | six3a | -0.052 |
| hoxc10a | 0.200 | apoa1b | -0.051 |
| hoxc6a | 0.196 | foxg1a | -0.051 |
| slc1a3a | 0.195 | mdh2 | -0.051 |
| nradd | 0.194 | otx5 | -0.051 |
| hoxb5a | 0.192 | aldob | -0.050 |
| hoxc4a | 0.188 | si:ch1073-80i24.3 | -0.050 |