| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb8a | 0.346 | celf2 | -0.076 |
| hoxb6b | 0.322 | en2b | -0.067 |
| hoxb5b | 0.316 | islr2 | -0.055 |
| hoxb6a | 0.308 | otx2a | -0.053 |
| hoxc1a | 0.289 | otx1 | -0.053 |
| hoxb5a | 0.274 | tcf7l2 | -0.053 |
| hoxc8a | 0.261 | mt-atp6 | -0.050 |
| hoxb7a | 0.260 | otx2b | -0.050 |
| hoxc4a | 0.248 | CR751602.2 | -0.049 |
| hoxb1b | 0.232 | xpr1a | -0.048 |
| hoxb9a | 0.217 | mir181b-3 | -0.048 |
| hoxb8b | 0.214 | ppp1r14ba | -0.048 |
| hoxa3a | 0.211 | ek1 | -0.046 |
| hoxd4a | 0.208 | tubb5 | -0.046 |
| dhrs3b | 0.207 | myt1la | -0.046 |
| hoxb3a | 0.204 | en2a | -0.045 |
| hoxc5a | 0.180 | ppiab | -0.045 |
| hoxc6a | 0.173 | CU467822.1 | -0.045 |
| raraa | 0.172 | ckbb | -0.044 |
| rxrga | 0.153 | gapdhs | -0.044 |
| BX001014.2 | 0.148 | cspg5a | -0.044 |
| wnt11r | 0.144 | ptprn2 | -0.044 |
| cdx4 | 0.143 | slc6a1a | -0.042 |
| hoxa5a | 0.143 | slc6a1b | -0.042 |
| slc1a3a | 0.140 | foxg1a | -0.041 |
| hoxd3a | 0.138 | nr2f2 | -0.041 |
| hoxa9a | 0.136 | irx1a | -0.041 |
| hoxc6b | 0.132 | nfia | -0.041 |
| hoxc9a | 0.131 | gpm6aa | -0.039 |
| CR751227.2 | 0.127 | irx7 | -0.038 |
| BX005254.3 | 0.119 | ckmt1 | -0.038 |
| hoxd9a | 0.111 | exoc6b | -0.037 |
| hoxb10a | 0.109 | cd99l2 | -0.037 |
| crabp2a | 0.106 | emx2 | -0.037 |
| vim | 0.105 | si:ch73-30b17.2 | -0.037 |