| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc4a | 0.310 | aldob | -0.057 |
| hoxb3a | 0.306 | eef1da | -0.051 |
| hoxc1a | 0.232 | si:dkey-16p21.8 | -0.051 |
| hoxb5b | 0.223 | cox17 | -0.048 |
| hoxd3a | 0.206 | tuba8l2 | -0.048 |
| hoxa3a | 0.187 | mgst1.2 | -0.046 |
| hoxb5a | 0.186 | en2b | -0.045 |
| raraa | 0.178 | stm | -0.045 |
| rxrga | 0.166 | rorb | -0.045 |
| BX322661.2 | 0.162 | otx2a | -0.044 |
| meis2b | 0.154 | otx2b | -0.043 |
| meis1b | 0.153 | six3b | -0.043 |
| znf503 | 0.151 | chchd10 | -0.042 |
| hoxa5a | 0.139 | foxg1b | -0.042 |
| slc1a3a | 0.138 | krt17 | -0.042 |
| tshz1 | 0.138 | polr3gla | -0.042 |
| meis3 | 0.137 | icn | -0.041 |
| rhbdl3 | 0.132 | si:ch211-152c2.3 | -0.041 |
| gbx1 | 0.131 | epcam | -0.040 |
| CABZ01075068.1 | 0.129 | si:ch211-207n23.2 | -0.040 |
| si:ch73-386h18.1 | 0.127 | ucp2 | -0.040 |
| hoxc5a | 0.124 | anxa2a | -0.039 |
| hoxb2a | 0.121 | gstp1 | -0.039 |
| mir219-3 | 0.120 | otx1 | -0.039 |
| CR751227.2 | 0.120 | si:dkey-248g15.3 | -0.039 |
| nr2f6b | 0.118 | six6b | -0.039 |
| hoxb1b | 0.117 | spint2 | -0.039 |
| gfap | 0.116 | dhrs13a.2 | -0.038 |
| XLOC-003689 | 0.116 | eno3 | -0.038 |
| hoxc3a | 0.115 | gapdh | -0.038 |
| pax3a | 0.114 | pou5f3 | -0.038 |
| tmeff1b | 0.110 | s100w | -0.038 |
| gas1b | 0.109 | scel | -0.038 |
| si:ch211-57n23.4 | 0.109 | selenow2b | -0.038 |
| XLOC-003690 | 0.109 | wu:fb18f06 | -0.038 |