| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc4a | 0.212 | foxg1b | -0.021 |
| hoxb3a | 0.207 | cadm3 | -0.021 |
| hoxd3a | 0.185 | pax6a | -0.020 |
| hoxa5a | 0.138 | pax6b | -0.019 |
| hoxb5a | 0.137 | rorb | -0.019 |
| ecrg4a | 0.128 | NC-002333.4 | -0.018 |
| hoxa3a | 0.122 | six3b | -0.017 |
| hoxc1a | 0.117 | fzd5 | -0.016 |
| hoxb5b | 0.114 | six6b | -0.016 |
| pmp22a | 0.113 | shisa2a | -0.015 |
| barx1 | 0.108 | ephb6 | -0.015 |
| LOC103909543 | 0.107 | anp32e | -0.015 |
| hoxb2a | 0.100 | hmx4 | -0.014 |
| fibina | 0.095 | vsx2 | -0.014 |
| ms4a17a.11 | 0.095 | wu:fi46h04 | -0.014 |
| hapln1a | 0.094 | hmx1 | -0.013 |
| BX322661.2 | 0.094 | tkta | -0.013 |
| clcf1 | 0.093 | sox18 | -0.013 |
| tuba8l3 | 0.093 | six3a | -0.013 |
| foxf2a | 0.091 | cyp26a1 | -0.012 |
| gbx1 | 0.090 | zic2b | -0.012 |
| meox2a | 0.088 | mt-co2 | -0.012 |
| hoxc3a | 0.088 | si:ch211-284e13.6 | -0.012 |
| CR812832.1 | 0.088 | stm | -0.012 |
| mab21l2 | 0.087 | si:ch211-129p13.1 | -0.012 |
| twist1a | 0.087 | si:ch211-152c2.3 | -0.011 |
| rarga | 0.086 | aqr | -0.011 |
| col6a2 | 0.086 | fabp11a | -0.011 |
| foxc1b | 0.086 | apoc1 | -0.011 |
| LO018188.1 | 0.085 | cd2bp2 | -0.011 |
| col6a4a | 0.085 | neurod4 | -0.011 |
| hpgd | 0.083 | pmelb | -0.011 |
| crabp1b | 0.083 | pax10 | -0.011 |
| mfap2 | 0.083 | lig1 | -0.011 |
| dlx4a | 0.083 | XLOC-014477 | -0.011 |