| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc4a | 0.397 | en2b | -0.093 |
| hoxb3a | 0.350 | islr2 | -0.073 |
| hoxc1a | 0.316 | otx2a | -0.072 |
| rxrga | 0.314 | otx1 | -0.072 |
| raraa | 0.294 | otx2b | -0.069 |
| hoxb5b | 0.265 | xpr1a | -0.068 |
| hoxd3a | 0.242 | tcf7l2 | -0.067 |
| hoxa3a | 0.230 | ckbb | -0.063 |
| wnt11r | 0.219 | en2a | -0.061 |
| slc1a3a | 0.212 | stm | -0.061 |
| hoxb5a | 0.212 | lef1 | -0.061 |
| hoxc3a | 0.208 | slc6a1b | -0.061 |
| crabp2a | 0.207 | pcp4a | -0.057 |
| meis1b | 0.182 | atpv0e2 | -0.057 |
| nr2f6b | 0.181 | irx7 | -0.056 |
| znf503 | 0.180 | si:ch211-152c2.3 | -0.056 |
| BX322661.2 | 0.170 | slc6a1a | -0.056 |
| plekhh1 | 0.170 | atp6v0cb | -0.056 |
| rhbdl3 | 0.169 | CR751602.2 | -0.055 |
| meis2b | 0.166 | emx2 | -0.055 |
| meis3 | 0.164 | gapdhs | -0.055 |
| rxrgb | 0.163 | pou5f3 | -0.055 |
| hoxa5a | 0.163 | si:dkey-81l17.6 | -0.054 |
| tshz1 | 0.161 | sv2a | -0.054 |
| si:ch211-286o17.1 | 0.155 | ek1 | -0.054 |
| hoxc5a | 0.154 | sox1b | -0.053 |
| gas1b | 0.153 | foxg1a | -0.053 |
| CABZ01075068.1 | 0.153 | celf2 | -0.053 |
| prdm13 | 0.152 | slc35g2b | -0.053 |
| gfap | 0.152 | si:dkey-46i9.1 | -0.053 |
| gbx1 | 0.146 | fezf2 | -0.052 |
| rbp5 | 0.145 | polr3gla | -0.052 |
| CR751227.2 | 0.141 | tpi1b | -0.052 |
| cygb1 | 0.140 | sncb | -0.052 |
| gsx2 | 0.138 | six3b | -0.051 |