| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb8a | 0.479 | stm | -0.126 |
| hoxb9a | 0.438 | si:ch211-243g18.2 | -0.126 |
| hoxb7a | 0.420 | agr2 | -0.123 |
| hoxc8a | 0.288 | otomp | -0.122 |
| hs3st3b1a | 0.268 | col2a1a | -0.120 |
| cxcr4b | 0.258 | col9a2 | -0.112 |
| hoxb6a | 0.249 | bricd5 | -0.096 |
| hoxb3a | 0.230 | si:dkey-98f17.3 | -0.095 |
| hoxb10a | 0.228 | col9a3 | -0.095 |
| fndc1 | 0.221 | col9a1a | -0.095 |
| pkdccb | 0.215 | sox10 | -0.095 |
| hoxc6a | 0.210 | si:dkey-16l2.17 | -0.094 |
| runx3 | 0.205 | col9a1b | -0.091 |
| wnt10a | 0.204 | atp1a1a.4 | -0.089 |
| hoxc4a | 0.204 | FP017215.1 | -0.089 |
| sash1a | 0.202 | si:ch211-80h18.1 | -0.087 |
| CABZ01033206.1 | 0.199 | matn4 | -0.086 |
| hoxc9a | 0.195 | atp1b1a | -0.086 |
| hoxc1a | 0.191 | efhd1 | -0.085 |
| her12 | 0.188 | pax2a | -0.081 |
| itga6b | 0.183 | ephb3 | -0.081 |
| aqp1a.2 | 0.181 | col11a1a | -0.080 |
| hoxd3a | 0.180 | acbd7 | -0.080 |
| met | 0.178 | itm2ba | -0.079 |
| hoxa4a | 0.177 | slc4a4b | -0.078 |
| si:dkey-1h24.2 | 0.166 | six1a | -0.078 |
| col12a1b | 0.165 | col15a1b | -0.078 |
| hoxb8b | 0.164 | col11a2 | -0.078 |
| sdk1b | 0.164 | cldna | -0.078 |
| kremen1 | 0.162 | tbx2a | -0.077 |
| pyya | 0.162 | hmga2 | -0.076 |
| krt4 | 0.160 | tbx2b | -0.074 |
| alcama | 0.159 | LOC101882875 | -0.074 |
| tfap2a | 0.159 | si:dkey-222f2.1 | -0.074 |
| cdx4 | 0.158 | AL954322.2 | -0.074 |