| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.585 | rplp2 | -0.220 |
| emx2 | 0.543 | krt91 | -0.204 |
| hoxc8a | 0.533 | eef1da | -0.193 |
| hoxb7a | 0.508 | rps29 | -0.190 |
| hoxb10a | 0.501 | gapdhs | -0.188 |
| BX005254.3 | 0.496 | icn | -0.185 |
| hoxb9a | 0.487 | anxa1a | -0.179 |
| LOC101882251 | 0.466 | ahcy | -0.179 |
| vcana | 0.466 | capns1a | -0.175 |
| insl5a | 0.453 | anxa2a | -0.174 |
| apoc1 | 0.448 | pvalb1 | -0.164 |
| hoxd9a | 0.439 | capgb | -0.162 |
| sp8b | 0.436 | s100v2 | -0.162 |
| sp8a | 0.420 | s100v1 | -0.159 |
| hoxc6b | 0.420 | pvalb2 | -0.159 |
| crabp2a | 0.420 | igfbp7 | -0.157 |
| b3gnt7 | 0.417 | krtt1c19e | -0.152 |
| hoxd10a | 0.416 | epgn | -0.150 |
| tpm4a | 0.407 | si:dkey-248g15.3 | -0.150 |
| asb11 | 0.401 | caspb | -0.148 |
| hoxd3a | 0.391 | ak1 | -0.148 |
| nradd | 0.388 | cxl34b.11 | -0.146 |
| mllt3 | 0.387 | tnn | -0.144 |
| hoxa10b | 0.386 | rpl38 | -0.139 |
| prickle1a | 0.382 | aqp3a | -0.139 |
| hoxa9a | 0.366 | ppl | -0.139 |
| hoxd12a | 0.366 | icn2 | -0.139 |
| BX927258.1 | 0.365 | nfkbiaa | -0.138 |
| emilin1b | 0.357 | si:dkey-33c14.3 | -0.137 |
| lin28a | 0.357 | si:ch211-105c13.3 | -0.137 |
| mdka | 0.356 | si:dkey-19b23.12 | -0.136 |
| ptgs1 | 0.353 | tgfbi | -0.136 |
| hoxa9b | 0.344 | pycard | -0.136 |
| ccdc3a | 0.340 | fbp1a | -0.133 |
| XLOC-001603 | 0.340 | actc1b | -0.132 |