| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.387 | hbae1.1 | -0.126 |
| hoxb7a | 0.356 | hbbe1.3 | -0.126 |
| mnx1 | 0.338 | prdx2 | -0.122 |
| hoxc8a | 0.325 | hbae3 | -0.121 |
| cdx4 | 0.320 | hbbe2 | -0.115 |
| BX001014.2 | 0.313 | hbae1.3 | -0.115 |
| hoxb9a | 0.305 | hbbe1.1 | -0.114 |
| BX005254.3 | 0.305 | blvrb | -0.113 |
| hoxa9a | 0.282 | cahz | -0.110 |
| hoxd10a | 0.274 | hemgn | -0.109 |
| hoxd9a | 0.273 | hbbe1.2 | -0.103 |
| hoxc6b | 0.272 | tspo | -0.099 |
| fgf10b | 0.262 | alas2 | -0.098 |
| dact2 | 0.260 | slc4a1a | -0.097 |
| fbln1 | 0.257 | nt5c2l1 | -0.095 |
| npas4l | 0.257 | gpx1a | -0.091 |
| hoxa11b | 0.254 | si:ch211-250g4.3 | -0.089 |
| hoxc9a | 0.246 | epb41b | -0.089 |
| vcana | 0.243 | zgc:163057 | -0.088 |
| vox | 0.240 | si:ch211-207c6.2 | -0.087 |
| lsp1 | 0.237 | creg1 | -0.087 |
| hoxa10b | 0.234 | nmt1b | -0.082 |
| cx43.4 | 0.231 | plac8l1 | -0.080 |
| apela | 0.230 | pvalb1 | -0.076 |
| pax8 | 0.227 | si:ch211-227m13.1 | -0.076 |
| lbx2 | 0.226 | tmod4 | -0.076 |
| ndnf | 0.226 | tmem14ca | -0.076 |
| wu:fb97g03 | 0.225 | fth1a | -0.076 |
| hoxb1b | 0.223 | sptb | -0.073 |
| hes6 | 0.215 | klf1 | -0.070 |
| tbxtb | 0.215 | hbae5 | -0.069 |
| etv2 | 0.211 | ucp3 | -0.067 |
| wnt5b | 0.210 | pvalb2 | -0.067 |
| hoxb3a | 0.209 | tfr1a | -0.065 |
| lin28a | 0.208 | hdr | -0.065 |