| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.430 | fabp3 | -0.091 |
| BX001014.2 | 0.400 | pvalb1 | -0.082 |
| hoxb10a | 0.395 | pvalb2 | -0.080 |
| hoxb7a | 0.391 | celf2 | -0.078 |
| hoxd10a | 0.347 | fabp7a | -0.072 |
| her1 | 0.346 | eef1da | -0.070 |
| msgn1 | 0.305 | ckbb | -0.069 |
| hoxc3a | 0.297 | gpm6aa | -0.068 |
| myf5 | 0.283 | hbbe1.3 | -0.068 |
| hoxd9a | 0.273 | actc1b | -0.067 |
| BX005254.2 | 0.271 | gapdhs | -0.063 |
| hoxc8a | 0.268 | hbae3 | -0.061 |
| hoxa10b | 0.267 | prdx2 | -0.061 |
| her7 | 0.263 | eif4a1b | -0.060 |
| hoxa11b | 0.259 | tmsb | -0.060 |
| nradd | 0.258 | rtn1a | -0.059 |
| tbx16l | 0.257 | hbae1.1 | -0.058 |
| apoc1 | 0.254 | icn | -0.058 |
| hoxc6b | 0.254 | stmn1b | -0.058 |
| tbx6 | 0.238 | tuba1c | -0.058 |
| hoxd12a | 0.236 | krtt1c19e | -0.057 |
| hoxd11a | 0.235 | mylpfa | -0.057 |
| mllt3 | 0.233 | marcksl1a | -0.056 |
| hoxa9a | 0.232 | ahcy | -0.054 |
| BX927258.1 | 0.231 | sod1 | -0.054 |
| znfl1k | 0.230 | CU467822.1 | -0.053 |
| hoxa11a | 0.226 | mex3b | -0.053 |
| XLOC-001964 | 0.226 | gpm6ab | -0.052 |
| BX927395.1 | 0.225 | icn2 | -0.052 |
| XLOC-042222 | 0.220 | elavl3 | -0.050 |
| hoxa9b | 0.215 | ndrg2 | -0.050 |
| sall4 | 0.215 | s100v2 | -0.050 |
| hspb1 | 0.214 | foxp4 | -0.049 |
| hoxb9a | 0.209 | ip6k2a | -0.049 |
| cdx1a | 0.207 | mdh1aa | -0.049 |