| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.440 | hbbe1.3 | -0.072 |
| hoxa10b | 0.309 | hbae1.1 | -0.072 |
| mnx1 | 0.309 | hbae3 | -0.072 |
| hoxb7a | 0.307 | hbbe1.1 | -0.065 |
| hoxc3a | 0.305 | hbae1.3 | -0.065 |
| cdx4 | 0.294 | prdx2 | -0.065 |
| BX001014.2 | 0.274 | hbbe2 | -0.064 |
| fbln1 | 0.269 | cahz | -0.063 |
| hoxc10a | 0.266 | pvalb1 | -0.060 |
| hoxd10a | 0.261 | blvrb | -0.059 |
| vox | 0.258 | hemgn | -0.059 |
| hoxa11b | 0.256 | hbbe1.2 | -0.058 |
| hoxb9a | 0.253 | tspo | -0.057 |
| her1 | 0.246 | slc4a1a | -0.054 |
| tbxtb | 0.238 | pvalb2 | -0.052 |
| hoxc8a | 0.233 | nt5c2l1 | -0.051 |
| hoxa9a | 0.231 | gpx1a | -0.050 |
| BX927395.1 | 0.230 | alas2 | -0.050 |
| hoxc6b | 0.230 | epb41b | -0.049 |
| fgf10b | 0.226 | zgc:163057 | -0.049 |
| apela | 0.223 | si:ch211-250g4.3 | -0.046 |
| hoxa11a | 0.217 | creg1 | -0.046 |
| sall4 | 0.217 | actc1b | -0.045 |
| hoxa9b | 0.216 | tmem14ca | -0.045 |
| cx43.4 | 0.215 | si:ch211-207c6.2 | -0.045 |
| npas4l | 0.214 | plac8l1 | -0.043 |
| wnt2bb | 0.213 | sod1 | -0.043 |
| her7 | 0.211 | tmod4 | -0.043 |
| tbxta | 0.210 | si:ch211-227m13.1 | -0.042 |
| greb1 | 0.209 | nmt1b | -0.041 |
| isl2a | 0.206 | selenoj | -0.041 |
| hoxd9a | 0.203 | clic2 | -0.038 |
| tbx16 | 0.201 | klf1 | -0.036 |
| LOC110438394 | 0.200 | rfesd | -0.036 |
| wnt5b | 0.200 | zgc:163080 | -0.036 |