| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.260 | CR383676.1 | -0.072 |
| BX001014.2 | 0.221 | rpl37 | -0.069 |
| hoxb7a | 0.202 | ptmaa | -0.069 |
| hoxc8a | 0.162 | marcksl1a | -0.068 |
| hoxd9a | 0.162 | rps10 | -0.066 |
| nradd | 0.160 | h3f3a | -0.065 |
| hoxc6b | 0.147 | zgc:114188 | -0.065 |
| cdx1a | 0.144 | nova2 | -0.061 |
| hoxb10a | 0.138 | fabp3 | -0.060 |
| hoxa9b | 0.134 | tuba1c | -0.059 |
| hoxb9a | 0.128 | tmsb4x | -0.056 |
| hoxa9a | 0.123 | gpm6aa | -0.054 |
| nkx1.2la | 0.121 | COX3 | -0.053 |
| hoxc3a | 0.119 | rtn1a | -0.053 |
| hspb1 | 0.113 | ppiab | -0.052 |
| apoc1 | 0.112 | zgc:158463 | -0.052 |
| hoxa10b | 0.110 | celf2 | -0.051 |
| ptgs1 | 0.107 | nme2b.1 | -0.051 |
| hoxa11b | 0.103 | hnrnpa0l | -0.049 |
| hoxc9a | 0.102 | rps17 | -0.048 |
| hoxd10a | 0.102 | stmn1b | -0.048 |
| wnt5b | 0.101 | ckbb | -0.048 |
| BX005254.2 | 0.096 | tmsb | -0.046 |
| apoeb | 0.091 | elavl3 | -0.045 |
| znfl2a | 0.088 | tubb5 | -0.045 |
| gig2g | 0.083 | mt-co2 | -0.044 |
| hoxd11a | 0.081 | marcksl1b | -0.043 |
| BX927258.1 | 0.081 | hmgb3a | -0.043 |
| hoxd12a | 0.080 | si:ch1073-429i10.3.1 | -0.042 |
| BX927395.1 | 0.079 | h3f3c | -0.041 |
| ptgdsb.1 | 0.078 | hbbe1.3 | -0.040 |
| zgc:171775 | 0.077 | actc1b | -0.040 |
| npm1a | 0.076 | wu:fb55g09 | -0.040 |
| vent | 0.076 | pvalb2 | -0.039 |
| fermt1 | 0.076 | calm1a | -0.039 |