| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb8a | 0.214 | celf2 | -0.030 |
| hoxc3a | 0.196 | fabp7a | -0.027 |
| hoxb6b | 0.188 | si:ch1073-80i24.3 | -0.025 |
| hoxc8a | 0.178 | rorb | -0.025 |
| hoxb6a | 0.169 | en2b | -0.024 |
| hoxb7a | 0.146 | cahz | -0.023 |
| hoxc6b | 0.134 | foxg1b | -0.023 |
| hoxb8b | 0.131 | nnr | -0.023 |
| hoxb5b | 0.130 | otx2a | -0.023 |
| hoxc5a | 0.125 | otx2b | -0.023 |
| hoxb1b | 0.123 | ahcy | -0.022 |
| hoxb9a | 0.123 | hbbe2 | -0.022 |
| hoxc1a | 0.121 | otx1 | -0.022 |
| hoxb5a | 0.119 | six3b | -0.022 |
| hoxb3a | 0.101 | aldob | -0.021 |
| cdx4 | 0.092 | si:dkeyp-114g9.1 | -0.021 |
| hoxa3a | 0.087 | six6b | -0.021 |
| hoxa9a | 0.083 | sod1 | -0.021 |
| hoxc4a | 0.081 | syt5b | -0.021 |
| dhrs3b | 0.077 | alas2 | -0.020 |
| hoxc9a | 0.076 | crx | -0.020 |
| hoxd3a | 0.076 | efhd1 | -0.020 |
| nradd | 0.073 | hbae3 | -0.020 |
| BX005254.3 | 0.070 | hbbe1.1 | -0.020 |
| cdx1a | 0.070 | hemgn | -0.020 |
| hoxd9a | 0.069 | irx7 | -0.020 |
| BX001014.2 | 0.067 | mir181b-3 | -0.020 |
| meis1a | 0.067 | prdx2 | -0.020 |
| col5a2a | 0.065 | pvalb1 | -0.020 |
| hoxa9b | 0.065 | apoa2 | -0.019 |
| meis1b | 0.065 | CU467822.1 | -0.019 |
| wnt5b | 0.065 | gapdh | -0.019 |
| aldh1a2 | 0.061 | h1m | -0.019 |
| tmie | 0.061 | hbae1.1 | -0.019 |
| hoxb10a | 0.060 | hbae1.3 | -0.019 |