| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxc3a | 0.170 | col9a1a | -0.055 |
| hoxb8a | 0.169 | col2a1a | -0.054 |
| hoxc6b | 0.164 | col9a2 | -0.053 |
| hoxc5a | 0.156 | fibina | -0.051 |
| hoxc1a | 0.122 | foxc1b | -0.048 |
| hoxb5b | 0.117 | rarga | -0.046 |
| hoxb6b | 0.108 | fgfbp2b | -0.046 |
| si:ch211-243a20.3 | 0.107 | cnmd | -0.044 |
| hoxb6a | 0.106 | ecrg4a | -0.043 |
| alkal2b | 0.105 | dlx5a | -0.043 |
| hoxb8b | 0.104 | col9a3 | -0.043 |
| hoxc8a | 0.103 | col11a2 | -0.042 |
| tmem98 | 0.097 | six1a | -0.040 |
| aldh1a2 | 0.094 | dlx2a | -0.039 |
| meis1b | 0.094 | six2a | -0.038 |
| rhag | 0.092 | dlx3b | -0.037 |
| hoxb3a | 0.091 | VIT | -0.037 |
| rdh10a | 0.088 | fxyd1 | -0.037 |
| sostdc1a | 0.086 | dlx4a | -0.037 |
| hoxb1b | 0.086 | dlx1a | -0.036 |
| rergla | 0.080 | sox9a | -0.034 |
| meis1a | 0.078 | ucmab | -0.033 |
| hoxb5a | 0.078 | cthrc1a | -0.033 |
| hoxc4a | 0.077 | col11a1a | -0.033 |
| hoxb7a | 0.077 | otos | -0.033 |
| meis3 | 0.077 | trabd2a | -0.033 |
| crabp1b | 0.075 | lhx6 | -0.032 |
| podxl | 0.074 | dlx4b | -0.031 |
| meis2b | 0.074 | hpgd | -0.031 |
| ftr82 | 0.072 | aldob | -0.030 |
| wnt7bb | 0.071 | CYTL1 | -0.030 |
| col7a1l | 0.071 | phlda3 | -0.030 |
| jam2b | 0.070 | KCTD15 | -0.030 |
| wnt10a | 0.070 | eya1 | -0.029 |
| wt1a | 0.069 | spon2b | -0.029 |