| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.365 | fabp7a | -0.229 |
| hoxc3a | 0.365 | CU467822.1 | -0.195 |
| hoxb9a | 0.349 | gpm6bb | -0.181 |
| hoxc8a | 0.330 | CR848047.1 | -0.164 |
| hoxb8a | 0.305 | slc1a2b | -0.152 |
| BX001014.2 | 0.276 | ppap2d | -0.150 |
| apela | 0.264 | atp1a1b | -0.149 |
| BX005254.3 | 0.259 | marcksl1a | -0.148 |
| hoxb10a | 0.259 | CU634008.1 | -0.147 |
| nradd | 0.244 | zgc:165461 | -0.146 |
| hspb1 | 0.229 | CR751602.2 | -0.141 |
| XLOC-042222 | 0.227 | ckbb | -0.134 |
| hoxb1b | 0.222 | tmsb4x | -0.132 |
| hoxa9a | 0.221 | si:ch73-30b17.2 | -0.132 |
| asb11 | 0.212 | nfia | -0.132 |
| gdf6b | 0.212 | ptn | -0.131 |
| BX927258.1 | 0.203 | slc1a3b | -0.130 |
| XLOC-001964 | 0.203 | gpm6aa | -0.130 |
| ldlrad2 | 0.203 | phox2bb | -0.130 |
| znfl2a | 0.193 | efhd1 | -0.128 |
| hoxc9a | 0.192 | cyp26b1 | -0.127 |
| mllt3 | 0.192 | celf2 | -0.124 |
| sp5l | 0.191 | crabp1a | -0.123 |
| sall4 | 0.189 | ca4a | -0.123 |
| hoxb3a | 0.188 | pvalb1 | -0.123 |
| chrd | 0.187 | glula | -0.121 |
| hoxc6b | 0.184 | fgfr2 | -0.120 |
| hoxa10b | 0.183 | pvalb2 | -0.118 |
| hoxd10a | 0.182 | atp1b4 | -0.116 |
| wnt11r | 0.176 | cspg5b | -0.115 |
| si:ch211-170d8.2 | 0.171 | cspg5a | -0.114 |
| hoxd3a | 0.167 | cxcl12a | -0.114 |
| col5a2a | 0.166 | actc1b | -0.113 |
| stm | 0.165 | efnb1 | -0.112 |
| hoxd9a | 0.165 | cdo1 | -0.111 |