| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxa10b | 0.481 | fabp7a | -0.227 |
| hoxd9a | 0.425 | atp1a1b | -0.180 |
| hoxd10a | 0.417 | zgc:165461 | -0.171 |
| hoxc10a | 0.385 | gpm6bb | -0.170 |
| hoxd11a | 0.385 | actb2 | -0.166 |
| hoxc11a | 0.367 | CU467822.1 | -0.155 |
| hoxa9b | 0.366 | msi1 | -0.144 |
| hoxd12a | 0.360 | id1 | -0.144 |
| hoxa11a | 0.319 | CR848047.1 | -0.144 |
| hoxb10a | 0.317 | atp1b4 | -0.143 |
| hoxa9a | 0.303 | mdka | -0.142 |
| hoxc11b | 0.292 | ppap2d | -0.142 |
| hoxd3a | 0.262 | cd63 | -0.139 |
| hoxb9a | 0.248 | qki2 | -0.138 |
| hoxc12b | 0.233 | cd82a | -0.136 |
| pik3r3b | 0.219 | efhd1 | -0.132 |
| LOC100537384 | 0.215 | notch3 | -0.131 |
| myt1b | 0.202 | itm2ba | -0.130 |
| BX005254.3 | 0.198 | slc1a2b | -0.130 |
| hoxc12a | 0.197 | nfia | -0.127 |
| cdx4 | 0.196 | sparc | -0.127 |
| pou2f2a | 0.188 | glula | -0.126 |
| lhx1a | 0.185 | fgfr2 | -0.123 |
| robo3 | 0.175 | sox3 | -0.119 |
| thsd7aa | 0.174 | ptn | -0.119 |
| nsg2 | 0.173 | slc1a3b | -0.119 |
| lhx5 | 0.172 | sox9a | -0.118 |
| elavl3 | 0.172 | klf6a | -0.118 |
| rbfox3a | 0.171 | slc6a1b | -0.117 |
| hoxc13a | 0.171 | jun | -0.116 |
| cplx2 | 0.170 | ptprz1b | -0.115 |
| h3f3d | 0.169 | actb1 | -0.114 |
| stx1b | 0.166 | si:ch1073-303k11.2 | -0.113 |
| epb41a | 0.163 | her6 | -0.112 |
| zc4h2 | 0.163 | plp1a | -0.111 |