| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd12a | 0.410 | celf2 | -0.045 |
| hoxc11b | 0.371 | fabp7a | -0.036 |
| hoxd10a | 0.354 | si:ch211-152c2.3 | -0.036 |
| hoxa11b | 0.350 | en2b | -0.030 |
| hoxa11a | 0.340 | rorb | -0.030 |
| hoxd11a | 0.340 | otx2a | -0.028 |
| hoxc10a | 0.324 | otx2b | -0.028 |
| hoxa10b | 0.313 | foxg1b | -0.027 |
| hoxd9a | 0.296 | cldnb | -0.026 |
| hoxb10a | 0.294 | otx1 | -0.026 |
| hoxc12b | 0.259 | six3b | -0.026 |
| hoxa9b | 0.242 | six6b | -0.025 |
| hoxc12a | 0.238 | foxg1a | -0.024 |
| hoxa9a | 0.228 | rhbg | -0.024 |
| hoxb9a | 0.228 | fut9d | -0.023 |
| hoxd13a | 0.188 | fzd5 | -0.023 |
| BX005254.3 | 0.174 | ptprn2 | -0.023 |
| hoxc9a | 0.165 | si:ch211-195b11.3 | -0.023 |
| hoxd3a | 0.162 | stm | -0.023 |
| hoxc13a | 0.161 | agr1 | -0.022 |
| her1 | 0.161 | cox17 | -0.022 |
| hoxb7a | 0.159 | nr2e1 | -0.022 |
| hoxc3a | 0.158 | ppdpfa | -0.022 |
| hoxc6b | 0.148 | scel | -0.022 |
| BX005254.2 | 0.138 | selenow2b | -0.022 |
| XLOC-042222 | 0.123 | shisa2a | -0.022 |
| sall4 | 0.123 | si:ch211-156b7.4 | -0.022 |
| hoxa13b | 0.120 | slc29a1a | -0.022 |
| emilin2b | 0.119 | tbx2b | -0.022 |
| fbln1 | 0.119 | top1l | -0.022 |
| hoxc13b | 0.115 | col9a1a | -0.022 |
| hoxc8a | 0.109 | aldob | -0.021 |
| cdx4 | 0.108 | cldne | -0.021 |
| ldlrad2 | 0.102 | CR751602.2 | -0.021 |
| her7 | 0.101 | hmx4 | -0.021 |