| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd10a | 0.407 | stm | -0.078 |
| hoxd12a | 0.395 | si:ch211-152c2.3 | -0.076 |
| hoxd13a | 0.369 | NC-002333.4 | -0.075 |
| hoxb10a | 0.360 | s100a1 | -0.069 |
| gdf11 | 0.332 | ell2 | -0.068 |
| hoxa11a | 0.306 | tbx16 | -0.066 |
| hoxa10b | 0.306 | metap2b | -0.066 |
| hoxa11b | 0.299 | pitx2 | -0.065 |
| hoxc11b | 0.297 | insb | -0.065 |
| fgf20a | 0.292 | wu:fb97g03 | -0.063 |
| her12 | 0.291 | xbp1 | -0.063 |
| pcp4a | 0.290 | anp32e | -0.063 |
| fgf4 | 0.281 | marcksl1b | -0.063 |
| hoxd9a | 0.280 | chrd | -0.062 |
| hoxa9a | 0.279 | COX7A2 | -0.062 |
| hoxd11a | 0.277 | FQ323156.1 | -0.062 |
| lrrc17 | 0.269 | shisa2a | -0.060 |
| myclb | 0.265 | cmtm6 | -0.060 |
| hoxa13b | 0.264 | fscn1a | -0.059 |
| hoxc13a | 0.260 | nr6a1a | -0.059 |
| her15.1 | 0.257 | epcam | -0.058 |
| hoxa9b | 0.256 | acin1b | -0.058 |
| hoxc10a | 0.255 | si:ch211-243g18.2 | -0.058 |
| fgf3 | 0.252 | bms1 | -0.058 |
| zgc:162939 | 0.250 | akap12b | -0.057 |
| alpi.1 | 0.248 | ndr2 | -0.056 |
| sall4 | 0.247 | hnrnpa1b | -0.056 |
| BX005254.3 | 0.241 | aldob | -0.056 |
| sst6 | 0.239 | klf17 | -0.055 |
| hoxc13b | 0.236 | gsc | -0.055 |
| wdr66 | 0.230 | zmp:0000000624 | -0.055 |
| fzd10 | 0.229 | fzd8b | -0.055 |
| XLOC-042222 | 0.225 | frzb | -0.055 |
| hoxb9a | 0.221 | pou5f3 | -0.054 |
| parvb | 0.219 | tdgf1 | -0.054 |