| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxa11b | 0.295 | hbae1.1 | -0.071 |
| hoxd10a | 0.274 | hbae3 | -0.066 |
| hoxd9a | 0.256 | hbae1.3 | -0.065 |
| hoxb10a | 0.247 | hbbe1.3 | -0.065 |
| hoxa10b | 0.239 | prdx2 | -0.065 |
| hoxa11a | 0.239 | hbbe2 | -0.063 |
| hoxb9a | 0.214 | alas2 | -0.063 |
| hoxd12a | 0.214 | blvrb | -0.063 |
| hoxd11a | 0.211 | hemgn | -0.062 |
| hoxc10a | 0.210 | cahz | -0.062 |
| hoxa9a | 0.204 | hbbe1.1 | -0.061 |
| hoxc11b | 0.200 | nt5c2l1 | -0.057 |
| hoxc3a | 0.196 | tspo | -0.056 |
| BX005254.3 | 0.193 | hbbe1.2 | -0.055 |
| hoxc9a | 0.189 | slc4a1a | -0.055 |
| hoxa9b | 0.188 | epb41b | -0.055 |
| hoxb7a | 0.187 | fth1a | -0.052 |
| tbxtb | 0.182 | mibp2 | -0.051 |
| BX005254.2 | 0.181 | gpx1a | -0.051 |
| mnx1 | 0.173 | nmt1b | -0.051 |
| fbln1 | 0.157 | zgc:163057 | -0.050 |
| postnb | 0.150 | tmem14ca | -0.048 |
| lsp1 | 0.145 | tfr1a | -0.047 |
| etv2 | 0.144 | creg1 | -0.046 |
| XLOC-021944 | 0.143 | plac8l1 | -0.046 |
| sall4 | 0.138 | rfesd | -0.046 |
| hoxc6b | 0.138 | hdr | -0.045 |
| hoxc12b | 0.138 | si:ch211-207c6.2 | -0.045 |
| XLOC-042222 | 0.136 | tmod4 | -0.043 |
| vcana | 0.134 | urod | -0.043 |
| hoxc8a | 0.134 | si:ch211-250g4.3 | -0.041 |
| hoxd3a | 0.134 | sptb | -0.041 |
| wnt2bb | 0.133 | si:ch211-227m13.1 | -0.040 |
| isl2a | 0.133 | ucp3 | -0.039 |
| greb1 | 0.130 | hbbe3 | -0.039 |