| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd12a | 0.444 | fabp7a | -0.172 |
| hoxc11b | 0.396 | atp1a1b | -0.133 |
| hoxa11b | 0.367 | actb2 | -0.124 |
| hoxd11a | 0.364 | zgc:165461 | -0.122 |
| hoxd10a | 0.342 | gpm6bb | -0.120 |
| hoxa11a | 0.329 | cd63 | -0.110 |
| hoxc12b | 0.321 | CU467822.1 | -0.109 |
| hoxc10a | 0.321 | id1 | -0.107 |
| hoxa10b | 0.313 | ppap2d | -0.107 |
| hoxd9a | 0.298 | itm2ba | -0.106 |
| hoxc12a | 0.272 | atp1b4 | -0.106 |
| hoxa9b | 0.243 | efhd1 | -0.103 |
| hoxb10a | 0.227 | CR848047.1 | -0.103 |
| hoxd3a | 0.215 | qki2 | -0.103 |
| hoxa9a | 0.214 | msi1 | -0.102 |
| hoxd13a | 0.188 | slc1a2b | -0.101 |
| hoxc13a | 0.176 | cd82a | -0.099 |
| pik3r3b | 0.174 | nfia | -0.098 |
| hoxb9a | 0.171 | ptn | -0.096 |
| myt1b | 0.165 | sparc | -0.096 |
| LOC100537384 | 0.156 | fgfr2 | -0.096 |
| snap25a | 0.145 | mdka | -0.095 |
| elavl3 | 0.142 | glula | -0.093 |
| pou2f2a | 0.139 | sox9a | -0.092 |
| zc4h2 | 0.133 | notch3 | -0.091 |
| kif26ab | 0.132 | her6 | -0.091 |
| h3f3d | 0.129 | XLOC-003690 | -0.090 |
| cplx2 | 0.129 | slc1a3b | -0.090 |
| stx1b | 0.129 | fosab | -0.089 |
| elavl4 | 0.128 | klf6a | -0.088 |
| olfm1b | 0.127 | si:ch1073-303k11.2 | -0.086 |
| rbfox3a | 0.126 | tmem47 | -0.086 |
| nsg2 | 0.124 | si:ch211-66e2.5 | -0.085 |
| si:ch73-386h18.1 | 0.124 | gpr37l1b | -0.085 |
| zfhx3 | 0.121 | si:dkey-85k7.7 | -0.084 |