| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.132 | fabp7a | -0.069 |
| sp5l | 0.116 | msi1 | -0.057 |
| fgf8a | 0.114 | XLOC-003689 | -0.055 |
| hspb1 | 0.112 | si:ch73-21g5.7 | -0.053 |
| hoxb10a | 0.111 | her4.2 | -0.053 |
| BX005254.3 | 0.109 | gpm6bb | -0.052 |
| hoxd10a | 0.105 | hbae1.1 | -0.049 |
| islr2 | 0.101 | hbbe1.3 | -0.049 |
| nradd | 0.101 | abhd6a | -0.049 |
| BX001014.2 | 0.098 | gfap | -0.048 |
| hoxb7a | 0.095 | hbae3 | -0.048 |
| apoeb | 0.094 | LOC798783 | -0.047 |
| nid2a | 0.093 | XLOC-003690 | -0.047 |
| msgn1 | 0.091 | hbbe1.1 | -0.046 |
| her1 | 0.091 | XLOC-003692 | -0.046 |
| apela | 0.089 | CU467822.1 | -0.045 |
| hoxd12a | 0.089 | her4.1 | -0.045 |
| BX927258.1 | 0.086 | plp1a | -0.045 |
| wnt5b | 0.086 | hbae1.3 | -0.044 |
| cdx1a | 0.085 | pvalb1 | -0.044 |
| her7 | 0.085 | cahz | -0.043 |
| sp6 | 0.084 | CU634008.1 | -0.043 |
| XLOC-042222 | 0.082 | ahcy | -0.042 |
| hoxa10b | 0.081 | hbbe2 | -0.042 |
| hoxa11b | 0.080 | pvalb2 | -0.042 |
| tbx16l | 0.080 | neurod4 | -0.041 |
| vcana | 0.080 | zgc:165461 | -0.041 |
| prickle1a | 0.079 | her15.1 | -0.041 |
| xpr1a | 0.079 | cldn5a | -0.040 |
| apoc1 | 0.078 | fabp3 | -0.040 |
| cyp26a1 | 0.078 | gadd45gb.1 | -0.039 |
| hoxc3a | 0.078 | hbbe1.2 | -0.039 |
| hoxd11a | 0.078 | hemgn | -0.038 |
| hoxa9a | 0.077 | sod1 | -0.038 |
| lamb1a | 0.077 | alas2 | -0.037 |