| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| sp5l | 0.224 | mdka | -0.149 |
| hoxd10a | 0.189 | fabp7a | -0.135 |
| fgf8a | 0.178 | gpm6bb | -0.124 |
| hoxb10a | 0.170 | sox3 | -0.122 |
| nkx1.2la | 0.168 | sparc | -0.117 |
| cdx4 | 0.166 | atp1a1b | -0.116 |
| noto | 0.163 | msi1 | -0.116 |
| XLOC-042222 | 0.162 | zgc:165461 | -0.112 |
| nradd | 0.161 | cd82a | -0.112 |
| hoxa11b | 0.157 | gfap | -0.111 |
| hoxa10b | 0.153 | notch3 | -0.110 |
| lrrc17 | 0.152 | CU467822.1 | -0.108 |
| apela | 0.151 | si:ch73-21g5.7 | -0.104 |
| hoxd12a | 0.147 | id1 | -0.101 |
| lhx4 | 0.146 | atp1b4 | -0.100 |
| sox14 | 0.146 | cldn5a | -0.099 |
| hoxd9a | 0.145 | her4.2 | -0.093 |
| cplx2 | 0.144 | si:ch211-251b21.1 | -0.092 |
| hoxa9a | 0.143 | XLOC-003689 | -0.090 |
| nrn1a | 0.143 | sdc4 | -0.090 |
| hoxc10a | 0.143 | her4.1 | -0.089 |
| BX005254.3 | 0.140 | plp1a | -0.089 |
| rbfox3a | 0.139 | btg2 | -0.088 |
| hoxd11a | 0.138 | qki2 | -0.088 |
| LHX3 | 0.136 | fgfr3 | -0.087 |
| adcyap1b | 0.135 | notch1b | -0.086 |
| hspb1 | 0.135 | CR848047.1 | -0.086 |
| gng2 | 0.135 | endouc | -0.086 |
| stxbp1a | 0.134 | nrarpb | -0.085 |
| hoxc11a | 0.132 | tmem47 | -0.085 |
| sncb | 0.131 | gas1b | -0.085 |
| snap25a | 0.129 | cd63 | -0.085 |
| jagn1a | 0.129 | XLOC-003690 | -0.084 |
| stx1b | 0.128 | si:ch73-265d7.2 | -0.083 |
| hoxa9b | 0.128 | slc6a9 | -0.083 |