| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd12a | 0.214 | alyref | -0.016 |
| hoxd10a | 0.185 | rrm1 | -0.015 |
| hoxd9a | 0.180 | rpa3 | -0.014 |
| hoxc12a | 0.179 | si:ch211-114n24.6 | -0.014 |
| hoxd11a | 0.173 | NC-002333.4 | -0.014 |
| hoxc10a | 0.166 | ccna2 | -0.013 |
| hoxc11b | 0.165 | h3f3a | -0.013 |
| XLOC-033650 | 0.163 | zgc:110216 | -0.013 |
| hoxa10b | 0.146 | smc4 | -0.013 |
| hoxa11a | 0.129 | snrpf | -0.013 |
| hoxa11b | 0.123 | CABZ01005379.1 | -0.012 |
| XLOC-026839 | 0.118 | abcf1 | -0.012 |
| hoxd13a | 0.118 | ptmab | -0.012 |
| FP102888.2 | 0.103 | ncapg | -0.012 |
| hoxb9a | 0.093 | psmd8 | -0.012 |
| hoxc12b | 0.093 | cenps | -0.012 |
| hoxb1b | 0.090 | hmgb2a | -0.012 |
| hoxb7a | 0.086 | hes2.2 | -0.012 |
| XLOC-001375 | 0.085 | fen1 | -0.012 |
| CU682780.1 | 0.085 | lig1 | -0.012 |
| XLOC-043534 | 0.084 | otx2b | -0.012 |
| hoxa9a | 0.080 | chaf1a | -0.012 |
| olfcg2 | 0.079 | slc25a3b | -0.012 |
| hoxc13a | 0.079 | mt-cyb | -0.011 |
| BX248318.1 | 0.078 | zgc:110540 | -0.011 |
| si:dkey-78l4.13 | 0.074 | XLOC-042899 | -0.011 |
| si:dkey-73p2.3 | 0.072 | rorb | -0.011 |
| hoxc3a | 0.071 | zgc:86764 | -0.011 |
| hoxa9b | 0.071 | efnb1 | -0.011 |
| hoxb10a | 0.069 | sox18 | -0.011 |
| hoxd3a | 0.068 | nasp | -0.011 |
| hoxc6b | 0.066 | haus4 | -0.011 |
| si:ch211-71m22.1 | 0.063 | ppiab | -0.011 |
| hoxc9a | 0.063 | atp5mc1 | -0.011 |
| si:ch211-106j24.1 | 0.062 | anp32e | -0.011 |