| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pax3a | 0.222 | gng3 | -0.069 |
| mdka | 0.208 | sncb | -0.065 |
| zic1 | 0.208 | atp5if1b | -0.062 |
| gas1a | 0.188 | atp6v0cb | -0.062 |
| zic5 | 0.185 | vamp2 | -0.062 |
| zic4 | 0.182 | atp6v1e1b | -0.061 |
| msgn1 | 0.177 | elavl4 | -0.059 |
| wls | 0.176 | gpm6ab | -0.059 |
| zic2a | 0.176 | rtn1b | -0.059 |
| boc | 0.175 | stmn1b | -0.057 |
| rfx4 | 0.173 | ywhag2 | -0.056 |
| olig3 | 0.168 | atp6v1g1 | -0.055 |
| XLOC-003690 | 0.168 | ywhah | -0.055 |
| msx1b | 0.166 | stxbp1a | -0.055 |
| zic3 | 0.166 | stx1b | -0.054 |
| cldn5a | 0.165 | gap43 | -0.053 |
| id1 | 0.165 | pvalb1 | -0.053 |
| gas1b | 0.163 | stmn2a | -0.053 |
| msx3 | 0.158 | gng2 | -0.052 |
| cdx4 | 0.157 | mllt11 | -0.052 |
| axin2 | 0.154 | cbfa2t3 | -0.051 |
| her2 | 0.154 | ndrg4 | -0.051 |
| zic6 | 0.153 | zgc:65894 | -0.051 |
| tbx16l | 0.150 | csdc2a | -0.050 |
| gdf10a | 0.143 | id4 | -0.050 |
| notch3 | 0.140 | nsg2 | -0.050 |
| slc1a3a | 0.140 | pvalb2 | -0.050 |
| mdkb | 0.138 | snap25a | -0.050 |
| tpbga | 0.137 | atp1a3a | -0.049 |
| prss35 | 0.135 | gabarapa | -0.049 |
| pdgfaa | 0.133 | ckbb | -0.048 |
| BX005254.3 | 0.132 | cnrip1a | -0.048 |
| metrn | 0.132 | gabarapl2 | -0.048 |
| her15.1 | 0.131 | snap25b | -0.048 |
| hoxb7a | 0.130 | sox4a | -0.048 |