| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic1 | 0.345 | elavl3 | -0.170 |
| zic2a | 0.314 | gng3 | -0.151 |
| prss35 | 0.301 | elavl4 | -0.144 |
| zic5 | 0.296 | stxbp1a | -0.143 |
| gas1a | 0.293 | myt1b | -0.142 |
| zic2b | 0.290 | gng2 | -0.142 |
| msx1b | 0.280 | stx1b | -0.141 |
| zic4 | 0.277 | sncb | -0.138 |
| zic3 | 0.276 | rtn1a | -0.138 |
| msx3 | 0.274 | vamp2 | -0.137 |
| pax3a | 0.270 | snap25a | -0.133 |
| gdf10a | 0.269 | rtn1b | -0.131 |
| boc | 0.253 | tmsb | -0.131 |
| mdka | 0.251 | ywhah | -0.130 |
| mdkb | 0.237 | cplx2 | -0.129 |
| wls | 0.232 | atp6v0cb | -0.127 |
| gsx2 | 0.196 | ptmaa | -0.125 |
| olig3 | 0.195 | si:dkey-276j7.1 | -0.124 |
| cdon | 0.191 | stmn1b | -0.123 |
| pdgfaa | 0.189 | tmem59l | -0.121 |
| zic6 | 0.179 | zc4h2 | -0.121 |
| axin2 | 0.176 | ywhag2 | -0.121 |
| AL845362.1 | 0.173 | jagn1a | -0.120 |
| wnt10b | 0.172 | syt2a | -0.120 |
| id1 | 0.171 | onecut1 | -0.119 |
| slc1a3a | 0.170 | stmn2a | -0.118 |
| her9 | 0.169 | tubb5 | -0.118 |
| tpbga | 0.165 | gap43 | -0.116 |
| gas1b | 0.164 | calm1a | -0.116 |
| wnt11r | 0.162 | mllt11 | -0.115 |
| tnfrsf19 | 0.160 | tuba1c | -0.115 |
| lbx1b | 0.160 | rbfox1 | -0.115 |
| rfx4 | 0.160 | zgc:65894 | -0.115 |
| si:dkey-34d22.1 | 0.159 | cplx2l | -0.115 |
| pmp22a | 0.159 | id4 | -0.114 |