| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx3 | 0.320 | msi1 | -0.046 |
| pitx1 | 0.265 | si:ch211-137a8.4 | -0.046 |
| lmx1ba | 0.142 | XLOC-003690 | -0.045 |
| LOC108180223 | 0.140 | pax6a | -0.044 |
| timp4.1 | 0.140 | sb:cb81 | -0.044 |
| lmx1bb | 0.137 | fabp7a | -0.041 |
| alx4a | 0.118 | sox3 | -0.041 |
| si:dkey-239j18.3 | 0.115 | sox19a | -0.040 |
| fmoda | 0.114 | sp8b | -0.040 |
| krt18a.1 | 0.110 | her12 | -0.039 |
| elovl6 | 0.107 | gas1b | -0.038 |
| he1.2 | 0.107 | krtt1c19e | -0.038 |
| zgc:174153 | 0.104 | wu:fa03e10 | -0.038 |
| ca6 | 0.101 | her15.1 | -0.038 |
| foxa2 | 0.100 | meis1b | -0.037 |
| pmp22a | 0.100 | XLOC-003689 | -0.037 |
| si:dkey-239j18.2 | 0.099 | gfap | -0.036 |
| ctslb | 0.098 | her2 | -0.036 |
| jam2b | 0.097 | hoxb3a | -0.036 |
| si:dkey-26g8.4 | 0.097 | XLOC-003692 | -0.036 |
| bhlha15 | 0.094 | pax6b | -0.035 |
| csrp1a | 0.094 | aep1 | -0.034 |
| inhbaa | 0.094 | her8a | -0.033 |
| si:dkey-269i1.4 | 0.094 | abcb5 | -0.032 |
| tubb6 | 0.094 | rrm1 | -0.032 |
| col6a3 | 0.093 | rorb | -0.032 |
| slc43a3b | 0.093 | meis2b | -0.032 |
| mfap2 | 0.092 | foxg1b | -0.031 |
| FQ323119.1 | 0.091 | her4.1 | -0.031 |
| lft2 | 0.091 | krt5 | -0.031 |
| shha | 0.091 | pax3a | -0.031 |
| lsp1 | 0.090 | pnp5a | -0.031 |
| foxa1 | 0.089 | zgc:55461 | -0.031 |
| lum | 0.089 | rrm2 | -0.031 |
| twist1a | 0.089 | six6b | -0.030 |