| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx3 | 0.350 | hmgb2a | -0.075 |
| foxa1 | 0.164 | sox3 | -0.070 |
| sim1b | 0.130 | meis1b | -0.066 |
| adcyap1b | 0.129 | pcna | -0.066 |
| nrn1a | 0.116 | mdka | -0.065 |
| sim1a | 0.114 | id1 | -0.063 |
| foxa2 | 0.114 | sox19a | -0.060 |
| dmrta2 | 0.109 | stmn1a | -0.059 |
| barhl2 | 0.106 | si:ch73-281n10.2 | -0.059 |
| gap43 | 0.103 | hmgb2b | -0.059 |
| neurod6a | 0.102 | rrm1 | -0.058 |
| lmx1ba | 0.101 | mcm7 | -0.058 |
| elovl6 | 0.099 | gas1b | -0.056 |
| mllt11 | 0.097 | hmga1a | -0.056 |
| slc17a6a | 0.097 | msna | -0.055 |
| tmsb2 | 0.095 | nasp | -0.055 |
| inab | 0.094 | selenoh | -0.055 |
| slc17a6b | 0.093 | chaf1a | -0.054 |
| gpc1a | 0.090 | XLOC-003690 | -0.054 |
| uncx | 0.089 | anp32b | -0.054 |
| sncb | 0.089 | dut | -0.053 |
| robo3 | 0.089 | rpa3 | -0.053 |
| ntng1a | 0.088 | ranbp1 | -0.053 |
| stmn2a | 0.088 | cdca7b | -0.053 |
| fkbp1ab | 0.087 | hoxb3a | -0.052 |
| gng3 | 0.087 | sb:cb81 | -0.052 |
| elavl4 | 0.087 | ccnd1 | -0.052 |
| onecut1 | 0.087 | mcm6 | -0.052 |
| bhlhe22 | 0.086 | nutf2l | -0.051 |
| ppp1r14ba | 0.082 | mki67 | -0.051 |
| stmn1b | 0.082 | lbr | -0.051 |
| islr2 | 0.081 | npm1a | -0.050 |
| tmsb | 0.080 | XLOC-003689 | -0.050 |
| lmx1bb | 0.080 | cx43.4 | -0.050 |
| gng2 | 0.079 | mcm2 | -0.050 |