| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx3 | 0.474 | hapln1a | -0.139 |
| pitx1 | 0.385 | fgfbp2b | -0.118 |
| lmx1bb | 0.345 | ecrg4a | -0.111 |
| scinla | 0.320 | dlx5a | -0.103 |
| lmx1ba | 0.289 | barx1 | -0.101 |
| aqp3a | 0.271 | dlx2a | -0.091 |
| tkta | 0.268 | mab21l2 | -0.088 |
| elovl6 | 0.261 | gsc | -0.087 |
| tubb6 | 0.253 | si:ch211-156j16.1 | -0.085 |
| si:dkey-164f24.2 | 0.246 | epyc | -0.084 |
| lrrc58a | 0.244 | foxd1 | -0.084 |
| wnt9b | 0.239 | hoxa2b | -0.083 |
| gpc1a | 0.237 | meis1b | -0.082 |
| slc29a1a | 0.235 | dlx4a | -0.081 |
| gyg1b | 0.226 | dlx1a | -0.080 |
| fhl2a | 0.223 | meis1a | -0.078 |
| thrap3a | 0.217 | matn1 | -0.076 |
| qdpra | 0.215 | cnmd | -0.075 |
| rcan2 | 0.213 | dlx4b | -0.075 |
| igfbp7 | 0.206 | hpgd | -0.074 |
| tpbga | 0.202 | grem2b | -0.073 |
| irx1b | 0.199 | col11a2 | -0.072 |
| fgl2a | 0.197 | ucmab | -0.072 |
| slc43a3b | 0.196 | pax9 | -0.071 |
| mgarp | 0.195 | wwp2 | -0.071 |
| timp4.1 | 0.195 | CR848683.2 | -0.070 |
| aqp3b | 0.194 | mia | -0.070 |
| ccka | 0.193 | nog3 | -0.070 |
| alx4a | 0.193 | acana | -0.070 |
| tfap2b | 0.189 | cpn1 | -0.069 |
| FO681288.1 | 0.188 | vwde | -0.069 |
| ca6 | 0.186 | nkx3.2 | -0.069 |
| irx2a | 0.186 | cspg4 | -0.069 |
| fmoda | 0.185 | si:dkey-19b23.8 | -0.068 |
| csrp1a | 0.184 | zic2a | -0.068 |