| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx3 | 0.464 | meis1b | -0.089 |
| nkx2.4a | 0.373 | hoxb3a | -0.081 |
| barhl1b | 0.291 | si:ch73-265d7.2 | -0.068 |
| nkx2.4b | 0.285 | hoxc3a | -0.067 |
| lmx1ba | 0.267 | vim | -0.067 |
| barhl2 | 0.258 | hoxb9a | -0.063 |
| prdx1 | 0.247 | hoxb8a | -0.063 |
| shha | 0.229 | gas1b | -0.060 |
| lmx1bb | 0.226 | hoxd3a | -0.057 |
| wnt8b | 0.204 | pax3a | -0.053 |
| dbx1a | 0.193 | sp8b | -0.053 |
| dmrta2 | 0.159 | hoxb1b | -0.053 |
| barhl1a | 0.149 | hoxb7a | -0.052 |
| sim2 | 0.148 | znf503 | -0.051 |
| dbx1b | 0.144 | hoxa3a | -0.050 |
| emx2 | 0.142 | hoxc9a | -0.050 |
| sim2.1 | 0.131 | col11a1a | -0.050 |
| epha7 | 0.128 | rgcc | -0.050 |
| im:7152348 | 0.123 | hoxb10a | -0.048 |
| sox11a | 0.117 | ndnf | -0.048 |
| CU459056.1 | 0.116 | meis2b | -0.048 |
| rasl11a | 0.114 | meis1a | -0.048 |
| pkdcca | 0.113 | irx3b | -0.047 |
| dhx32b | 0.112 | mdka | -0.047 |
| fgfr3 | 0.112 | pax6b | -0.046 |
| tmem88b | 0.110 | hoxd9a | -0.045 |
| tnfrsf19 | 0.109 | hoxc8a | -0.045 |
| fgfr4 | 0.106 | pax6a | -0.044 |
| zbtb16b | 0.105 | nkx6.1 | -0.044 |
| il34 | 0.103 | hoxa10b | -0.043 |
| ntn1b | 0.097 | hoxc1a | -0.043 |
| foxa1 | 0.097 | raraa | -0.043 |
| nell2a | 0.094 | col4a5 | -0.042 |
| inhbaa | 0.090 | meis2a | -0.040 |
| ptprn2 | 0.089 | spry4 | -0.040 |