| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxd10a | 0.410 | NC-002333.4 | -0.088 |
| hoxd12a | 0.405 | stm | -0.088 |
| hoxb10a | 0.380 | s100a1 | -0.082 |
| hoxd11a | 0.373 | si:ch211-152c2.3 | -0.080 |
| hoxa11b | 0.357 | marcksl1b | -0.076 |
| hoxa10b | 0.322 | tbx16 | -0.074 |
| gdf11 | 0.298 | anp32e | -0.073 |
| hoxc11a | 0.297 | cactin | -0.071 |
| hoxd9a | 0.296 | wu:fb97g03 | -0.071 |
| alpi.1 | 0.288 | acin1b | -0.070 |
| her12 | 0.287 | hnrnpa1a | -0.070 |
| hoxa11a | 0.284 | fscn1a | -0.069 |
| fgf20a | 0.276 | si:dkey-92i17.2 | -0.068 |
| hoxc13a | 0.275 | bms1 | -0.068 |
| lrrc17 | 0.274 | insb | -0.068 |
| hoxc10a | 0.273 | chrd | -0.067 |
| sall4 | 0.265 | cst3 | -0.067 |
| fgf4 | 0.262 | pitx2 | -0.067 |
| hoxc13b | 0.262 | si:dkey-66i24.9 | -0.067 |
| hoxa9a | 0.255 | shisa2a | -0.067 |
| fzd10 | 0.253 | si:ch73-160h15.3 | -0.066 |
| pcp4a | 0.248 | COX7A2 | -0.066 |
| myclb | 0.247 | metap2b | -0.066 |
| hoxc12a | 0.244 | rps18 | -0.065 |
| hoxd13a | 0.239 | sfpq | -0.065 |
| fn1a | 0.239 | polr2gl | -0.064 |
| dand5 | 0.238 | akap12b | -0.064 |
| her4.1 | 0.230 | ing5b | -0.064 |
| htr5aa | 0.226 | nr6a1a | -0.063 |
| fgf3 | 0.225 | bambia | -0.063 |
| sst6 | 0.221 | zmp:0000000624 | -0.062 |
| XLOC-042222 | 0.221 | hnrnpa1b | -0.062 |
| BX005254.2 | 0.219 | ube2na | -0.061 |
| BX005254.3 | 0.219 | ndr2 | -0.061 |
| enc3 | 0.219 | gar1 | -0.060 |