| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb10a | 0.363 | nme2b.1 | -0.135 |
| hoxd9a | 0.362 | cldnb | -0.119 |
| hoxc8a | 0.356 | igfbp7 | -0.117 |
| hoxd10a | 0.352 | ociad2 | -0.112 |
| LOC101882251 | 0.337 | phlda2 | -0.109 |
| hoxc3a | 0.336 | icn | -0.107 |
| sp8b | 0.322 | rps29 | -0.106 |
| hoxb7a | 0.322 | sox2 | -0.104 |
| cdx4 | 0.320 | nkx2.3 | -0.103 |
| hoxa10b | 0.318 | sox3 | -0.103 |
| hoxb9a | 0.316 | eppk1 | -0.100 |
| BX005254.3 | 0.305 | pitx1 | -0.099 |
| hoxa9b | 0.293 | ahcy | -0.099 |
| vcana | 0.290 | six1b | -0.097 |
| hoxd12a | 0.289 | prdx2 | -0.096 |
| hoxc6b | 0.286 | nanos1 | -0.095 |
| hoxd11a | 0.279 | rpl37 | -0.094 |
| sp8a | 0.276 | pitx2 | -0.092 |
| insl5a | 0.273 | sod1 | -0.092 |
| crabp2a | 0.272 | fxyd1 | -0.091 |
| emx2 | 0.264 | evplb | -0.090 |
| ccdc3a | 0.262 | meis1b | -0.090 |
| mdka | 0.259 | rpl38 | -0.090 |
| hoxa9a | 0.257 | rplp1 | -0.089 |
| hoxc11b | 0.256 | sostdc1a | -0.089 |
| hoxa11b | 0.254 | scel | -0.089 |
| apoc1 | 0.247 | pvalb1 | -0.088 |
| hoxd3a | 0.246 | krt1-19d | -0.088 |
| hoxc10a | 0.243 | si:ch73-204p21.2 | -0.088 |
| nradd | 0.234 | tgfb3 | -0.088 |
| mllt3 | 0.230 | mycn | -0.088 |
| sdr16c5a | 0.221 | tbx1 | -0.088 |
| sp9 | 0.217 | mgst1.2 | -0.087 |
| ogna | 0.215 | marcksl1a | -0.087 |
| prickle1a | 0.214 | rplp2 | -0.087 |