| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.260 | celf2 | -0.051 |
| hoxa9a | 0.199 | marcksl1b | -0.038 |
| hoxc8a | 0.195 | marcksl1a | -0.035 |
| hoxb7a | 0.194 | nova2 | -0.034 |
| hoxb10a | 0.175 | gpm6aa | -0.033 |
| hoxd9a | 0.168 | mdkb | -0.032 |
| hoxa9b | 0.154 | tuba1c | -0.031 |
| hoxc6b | 0.142 | atp5mc3a | -0.029 |
| hoxb8a | 0.141 | cspg5a | -0.029 |
| hoxc3a | 0.131 | pcdh19 | -0.028 |
| hoxa10b | 0.114 | rtn1a | -0.028 |
| cdx4 | 0.108 | mex3b | -0.028 |
| BX001014.2 | 0.103 | zc4h2 | -0.027 |
| hoxc10a | 0.103 | hmgb1b | -0.027 |
| BX005254.3 | 0.102 | hmgb1a | -0.027 |
| hoxa11b | 0.099 | efnb3b | -0.027 |
| hoxd10a | 0.098 | cfl1 | -0.027 |
| si:ch73-380l10.2 | 0.078 | ppp1r14ba | -0.027 |
| nradd | 0.075 | myt1la | -0.026 |
| hoxd11a | 0.075 | hnrnpa0l | -0.026 |
| BX005254.2 | 0.069 | cd99l2 | -0.026 |
| vsx1 | 0.066 | hmgb3a | -0.026 |
| p2rx3a | 0.065 | ptprn2 | -0.026 |
| hoxb1b | 0.065 | ppiab | -0.026 |
| hoxc11a | 0.065 | si:dkey-276j7.1 | -0.025 |
| arid3c | 0.062 | mbd3b | -0.025 |
| cdx1a | 0.058 | kdm6bb | -0.025 |
| XLOC-038795 | 0.057 | tubb5 | -0.024 |
| LHX3 | 0.056 | zgc:165461 | -0.024 |
| wnt5b | 0.055 | fam49al | -0.024 |
| BX248318.1 | 0.054 | en2b | -0.023 |
| ldlrad2 | 0.054 | si:ch211-288g17.3 | -0.023 |
| hoxd12a | 0.054 | fscn1a | -0.023 |
| hoxa11a | 0.054 | celf4 | -0.023 |
| hes2.1 | 0.053 | cbx1b | -0.023 |