| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb9a | 0.373 | rarga | -0.096 |
| hoxc8a | 0.255 | col9a1a | -0.090 |
| hoxb10a | 0.243 | col2a1a | -0.083 |
| hoxa9a | 0.241 | col9a2 | -0.081 |
| aplnr2 | 0.233 | foxc1b | -0.075 |
| hoxc3a | 0.216 | fgfbp2b | -0.074 |
| hoxa9b | 0.198 | dlx5a | -0.070 |
| hoxa10b | 0.174 | ecrg4a | -0.069 |
| postnb | 0.173 | six1a | -0.065 |
| emilin2b | 0.172 | col11a2 | -0.065 |
| hoxc6b | 0.166 | col9a3 | -0.063 |
| hoxc10a | 0.165 | gsc | -0.062 |
| hoxd9a | 0.164 | sox9a | -0.060 |
| col5a2a | 0.158 | hpgd | -0.059 |
| cfd | 0.152 | dlx2a | -0.059 |
| si:dkey-238c7.16 | 0.152 | six2a | -0.058 |
| hoxb7a | 0.149 | VIT | -0.058 |
| col1a1b | 0.145 | dlx3b | -0.055 |
| dio3b | 0.140 | LOC101883507 | -0.054 |
| tnn | 0.139 | KCTD15 | -0.054 |
| tuba8l2 | 0.137 | dlx1a | -0.054 |
| hoxb8a | 0.137 | otos | -0.053 |
| ndnf | 0.136 | dlx4a | -0.052 |
| hoxb1b | 0.135 | barx1 | -0.052 |
| glt8d2 | 0.134 | cyp26b1 | -0.052 |
| si:ch211-286o17.1 | 0.125 | fibina | -0.051 |
| zgc:154093 | 0.123 | col8a2 | -0.051 |
| c1qtnf12 | 0.122 | ucmab | -0.050 |
| ca6 | 0.120 | fxyd1 | -0.050 |
| hoxd10a | 0.119 | rgs5a | -0.050 |
| hoxc11a | 0.118 | sema3bl | -0.050 |
| hoxa11b | 0.117 | tgfb3 | -0.049 |
| si:dkey-195m11.8 | 0.116 | sod1 | -0.049 |
| cd82a | 0.116 | lhx6 | -0.048 |
| arl4ca | 0.115 | CYTL1 | -0.048 |