| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hoxb8a | 0.440 | fabp7a | -0.245 |
| hoxb9a | 0.427 | atp1a1b | -0.182 |
| hoxc3a | 0.383 | ppap2d | -0.176 |
| hoxb7a | 0.330 | CU467822.1 | -0.173 |
| hoxc9a | 0.295 | efhd1 | -0.172 |
| hoxa9a | 0.248 | gpm6bb | -0.166 |
| hoxb1b | 0.236 | ptn | -0.165 |
| hoxb3a | 0.225 | itm2ba | -0.164 |
| hoxb8b | 0.208 | nfia | -0.163 |
| lhx1a | 0.208 | qki2 | -0.163 |
| hoxb6b | 0.204 | glula | -0.161 |
| hoxa3a | 0.200 | slc1a2b | -0.160 |
| hoxc1a | 0.197 | CR848047.1 | -0.160 |
| hoxd3a | 0.195 | cd63 | -0.154 |
| h3f3d | 0.191 | slc1a3b | -0.149 |
| tmeff1b | 0.191 | si:ch211-66e2.5 | -0.147 |
| hoxc6b | 0.190 | cd82a | -0.147 |
| tubb2b | 0.184 | cdo1 | -0.139 |
| stxbp1a | 0.184 | cspg5b | -0.139 |
| si:ch73-386h18.1 | 0.184 | gpr37l1b | -0.138 |
| stx1b | 0.184 | atp1b4 | -0.136 |
| myt1b | 0.180 | CR751602.2 | -0.131 |
| robo3 | 0.178 | slc6a1b | -0.130 |
| hoxc6a | 0.177 | sox9a | -0.130 |
| zfhx3 | 0.175 | fgfr2 | -0.130 |
| elavl3 | 0.175 | cxcl12a | -0.129 |
| zgc:100920 | 0.173 | phox2bb | -0.128 |
| rbfox3a | 0.172 | zgc:165461 | -0.128 |
| ptmab | 0.172 | cox4i2 | -0.127 |
| jagn1a | 0.171 | crabp1a | -0.127 |
| hoxb10a | 0.170 | her6 | -0.126 |
| atcaya | 0.170 | celf2 | -0.126 |
| hnrnpaba | 0.167 | si:dkey-204f11.64 | -0.125 |
| ube2ql1 | 0.167 | klf6a | -0.124 |
| zc4h2 | 0.166 | gnai2a | -0.124 |